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Improved Bolt LMM - #75

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dcdehaas merged 2 commits into
aprilweilab:mainfrom
CornellHPC:improve_bolt
Sep 29, 2026
Merged

dcdehaas merged 2 commits into
aprilweilab:mainfrom
CornellHPC:improve_bolt

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@YfLi03

@YfLi03 YfLi03 commented Sep 17, 2026 •

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Two improvements are made to Bolt LMM implementation:

  • Support runs with missingness + covariates
  • Improve SNP selection in calibration stage ( those with x_norm2 <= 0.0 are filtered out)
    A test is added for missingness + covariates for Bolt LMM.
    Additionally, a bug related to the miss array with cupy backend is fixed

@dcdehaas
dcdehaas merged commit 921768e into aprilweilab:main Sep 29, 2026
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2 participants