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@Moldia

Molecular Diagnostics (Mats Nilsson research group)

Scripts and softwares used in research

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  1. Xenium_benchmarking Xenium_benchmarking Public

    Code used to benchmark Xenium

    Jupyter Notebook 73 13

  2. multi_padlock_design multi_padlock_design Public

    Padlock design pipeline for multiplexed assay with multiple probes per target in cDNA-based expression profiling

    Python 14 15

  3. InSituCNV InSituCNV Public

    Jupyter Notebook 11

  4. Lee_2023 Lee_2023 Public

    All the code described in the Lee et al. (2023) paper

    Jupyter Notebook 10 11

  5. in_situ_seq in_situ_seq Public

    Basic analysis pipeline for in situ sequencing

    MATLAB 5 1

  6. Tools Tools Public

    Repository containing all the preprocessing and analysis tools generated in Molecular Diagnosis group, Science for Life Laboratories, Stockholm University, Sweden

    MATLAB 4 3

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