biobank

Tools for extracting the raw optical coherence tomography (OCT) and fundus data from proprietary file formats.

MOLGENIS - for scientific data: management, exploration, integration and analysis.

An R package to manipulate and explore UK Biobank data

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

LImBuS is an open source, standards compliant Biobank Information Management System developed by researchers from Aberystwyth University.

An Open-source access negotation system for Research Infrastructures

DrugTargetWorld: a synthetic biobank for training and benchmarking AI scientists on end-to-end drug target discovery. Paper: arXiv:2610.09558

The Minimum Information About BIobank data Sharing (MIABIS) is a biobank-specific terminology enabling the sharing of minimal biobank-related data for different purposes across a wide range of database implementations.

Biorepository application for tracking biospecimens.

snpnet - Efficient Lasso Solver for Large-scale genetic variant data

Biobank Web Application

Recomb-Mix: a local ancestry inference tool

Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/client_examples seems to be the official alternatives.

The BBMRI-ERIC Negotiator is a service for structured negotiation with biological resources dealing with human data and/or biological samples. The reference implementation for the frontend is available in this repository.

Functions to analyse UK Biobank genetic data directly from DNA Nexus' RStudio Workbench

The BBMRI-ERIC Negotiator service for structured negotiation with biological resources dealing with human data and/or biological samples.

This is the source for the BBMRI.de / GBA Implementation Guide.

Multiresponse time-to-event Cox proportional hazards model - CPU

Multiresponse time-to-event Cox proportional hazards model - GPU

A data integration tool for BBMRI-ERIC biobanks.