python_ALE: First stab. - #48

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wwood:python_ALE

Commits on Mar 20, 2026

python_ALE: First stab.
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8a4d78f
Fix PR review issues: MH acceptance, rate multiplier ordering, and bip test

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690d721
Implement per-branch rate multiplier optimization in ALEml_undated

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935c690
Fix MCMC transfer accumulation, ALEevaluate totals, and add S_with_ranks

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28b6755
Fix optimizer gate, no_T sampling bias, alpha smoothing, and Dip_counts access

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26fa7e6
Fix MCMC robustness issues and mark slow tests

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cd641f7
Defer numpy import, handle singleton trees, add build dep to test task

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a850dac
Fix singleton tree parsing, ALEadd subsampling order, and optimizer bounds

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8b9bd57
Tighten singleton tree parsing and add build dep to test-fast

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1f5e57d
Handle singleton trees like C++: build one-leaf ALE and return immediately

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6213daa
Add tests for singleton tree observation and mixed singleton/tree files

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6ff1f0e

Commits on Mar 21, 2026

Add argparse interface with help messages, keeping original bespoke parser

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bf85cea
Accept both --key value and key=value argument styles, fix sample=0 division

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38e6c12
Print argparse help when invoked with no arguments

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ae29931
Show argparse help when subcommands are invoked with no arguments

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b2a76e2