v0.16.0

What's Changed

• ci: fix Apptainer install by dropping Launchpad PPA by @Copilot in #43
• Improve test coverage and fix unclassified output declaration by @cokelaer in #44

Full Changelog: v0.15.0...v0.16.0

v0.15.0

What's Changed

• Migrate multitax to sequana-wrappers shells structure by @Copilot in #37
• Use dict-style access for config variable in multitax.rules by @Copilot in #38
• fix main for shell migration by @cokelaer in #41

New Contributors

• @Copilot made their first contribution in #37

Full Changelog: v0.14.0...v0.15.0

v0.14.0

What's Changed

• update container and version by @cokelaer in #36

Full Changelog: v0.13.0...v0.14.0

v0.13.0

What's Changed

• Fix pipeline when using apptainers. by @cokelaer in #33
• pin pulp by @cokelaer in #34
• update pipeline to use new wrappers/sequana. by @cokelaer in #35

Full Changelog: v0.12.2...v0.13.0

v0.12.2

What's Changed

• add precommit, update apptainer by @cokelaer in #28
• Cleanup by @cokelaer in #30
• Fix possible dag relation for multiqc inputs by @cokelaer in #31

Full Changelog: v0.12.1...v0.12.2

v0.12.1

What's Changed

• Update apptainers by @cokelaer in #27

Full Changelog: v0.12.0...v0.12.1

v0.12.0

What's Changed

• Refactor to use click framework by @cokelaer in #25

Full Changelog: v0.11.1...v0.12.0

v0.11.1

What's Changed

• wrappers version now in the config file
• Fix #16 (missing import) by @cokelaer in #22
• Remove useless conda installation in CI by @cokelaer in #23

Full Changelog: 0.11.0...v0.11.1

v0.11.0

What's Changed

• Add blast by @cokelaer in #7
• handle empty case (adding test) by @cokelaer in #11
• Fixing blast integration by @cokelaer in #13
• Fix classified by @cokelaer in #14
• add singularity containers by @cokelaer in #17
• Update pipeline with wrappers and apptainers by @cokelaer in #19
• fix apptainer workflow by @cokelaer in #20
• Fix CI workflow to install scipy with py3.8/3.9 by @cokelaer in #21

Full Changelog: https://github.com/sequana/multitax/commits/0.11.0