v1.5.0

What's Changed

• Fix CI: run mapper.sh with bash instead of sh by @Copilot in #28
• ci: bump apptainer workflow to Python 3.11 by @Copilot in #29
• Fix CI by @cokelaer in #30
• ci: fix Apptainer install by dropping Launchpad PPA by @Copilot in #31
• update containers by @cokelaer in #32
• Add optional FastQC on raw reads (--do-fastqc); bump to 1.5.0 by @cokelaer in #33

Full Changelog: v1.4.1...v1.5.0

v1.4.1

What's Changed

• Fix Apptainer CI: replace obsolete flag and modernize workflow by @Copilot in #25
• use new rulegraph snippet by @cokelaer in #26
• pin version by @cokelaer in #27

New Contributors

• @Copilot made their first contribution in #25

Full Changelog: v1.4.0...v1.4.1

v1.4.0

What's Changed

• Update mapper to use sequana_wrappers new shells and improve README by @cokelaer in #23

Full Changelog: v1.3.1...v1.4.0

v1.3.1

What's Changed

• put back BAM files in final output (not a temp file anymore) by @cokelaer in #21
• update metadata by @cokelaer in #22

Full Changelog: v1.3.0...v1.3.1

v1.3.0

What's Changed

• update pipeline to use new sequana_coverage version by @cokelaer in #20

Full Changelog: v1.2.1...v1.3.0

v1.2.1

What's Changed

• Fix bwa_split by @cokelaer in #19

Full Changelog: v1.2.0...v1.2.1

v1.2.0

What's Changed

• implement bwa_split to analyse large fastq files by @cokelaer in #18

Full Changelog: v1.1.0...v1.2.0

v1.1.0

What's Changed

• Set sequana_coverage to False by default (to follow docstring) by @khourhin in #15
• Update pipeline to filter BAM from unmapped reads by @cokelaer in #13
• Update pipeline to use click. Fix coverage. by @cokelaer in #16

Full Changelog: v1.0.0...v1.1.0

v1.0.0

What's Changed

• Use graphviz apptainer and workflow updates by @cokelaer in #11

Full Changelog: v0.12.0...v1.0.0

v0.12.0

What's Changed

• add singularity by @cokelaer in #8

Full Changelog: v0.11.1...v0.12.0