solo: cbMinP posterior threshold, oneExact guard, adapter-anchored geometry (replaces #150) - #165

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BenjaminDEMAILLE wants to merge 9 commits into

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BenjaminDEMAILLE:bd/solo-adapter-anchored

Commits on Jul 30, 2026

fix(solo): apply STAR's cbMinP posterior threshold and the oneExact guard

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98d2ec3
feat(solo): --soloOutFormatFeaturesGeneField3, and lock the homopolymer-UMI rule

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f3f645a
feat(solo): --soloChemistry geometry presets, and refuse --soloCBtype String

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589bd5c
feat(solo): adapter-anchored CB_UMI_Complex geometry

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6f45bc1
fix(solo): the adapter search takes the best-scoring match, not the leftmost

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2d4cca8
revert(solo): drop --soloChemistry, which is not a STAR parameter

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972829c
docs(divergence): record that all four homopolymer UMIs are rejected

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9f049f8
test(solo): name the cbMinP threshold and oneExact guard as their own tests

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e77ac0a
docs(changelog): record the solo barcode flags and the adapter fix

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eb5956a