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Move flags test in overlap_remove() #1990

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Merged
vasudeva8 merged 1 commit into from
Mar 13, 2026
Merged

Move flags test in overlap_remove() #1990

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6 changes: 3 additions & 3 deletions sam.c
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Original file line number Diff line number Diff line change
Expand Up @@ -5980,12 +5980,12 @@ static void overlap_remove(bam_plp_t iter, const bam1_t *b)
{
if ( !iter->overlaps ) return;

if ( b->core.flag&BAM_FUNMAP || !(b->core.flag&BAM_FPROPER_PAIR) ) //no need
return;

khiter_t kitr;
if ( b )
{
if ( b->core.flag&BAM_FUNMAP || !(b->core.flag&BAM_FPROPER_PAIR) ) //no need
return;

kitr = kh_get(olap_hash, iter->overlaps, bam_get_qname(b));
if ( kitr!=kh_end(iter->overlaps) )
kh_del(olap_hash, iter->overlaps, kitr);
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