Issues

• Question about subsampling process in ATAC-seq analysis

  reskejak/ATAC-seq#20 · Filter by author zhihaoKing opened on Apr 8, 2025

• ChIP-seq broadpeaks analysis

  reskejak/ATAC-seq#19 · Filter by author allaway opened on Nov 12, 2024
  1

• csaw_workflow.R script: Error in (function (classes, fdef, mtable) (csaw_workflow.R#116): unable to find an inherited method for function ‘seqinfo’ for signature ‘"NULL"’ #15

  reskejak/ATAC-seq#18 · Filter by author mglgc opened on Oct 4, 2024
  2

• Clarification on BAM files used for CSAW_workflow

  reskejak/ATAC-seq#17 · Filter by author jasminemesparza opened on Aug 8, 2024
  1

• Error in csaw_workflow: Error in (function (classes, fdef, mtable) (csaw_workflow.R#116): unable to find an inherited method for function ‘seqinfo’ for signature ‘"NULL"’

  reskejak/ATAC-seq#15 · Filter by author prmunn opened on Jan 25, 2024
  2

• Use for multiple sample differential analysis

  reskejak/ATAC-seq#14 · Filter by author amootta opened on Aug 30, 2023
  1

• csaw regionCounts error

  reskejak/ATAC-seq#13 · Filter by author baylward333 opened on Oct 10, 2022
  2

• Error with minimalbedpe.sh

  reskejak/ATAC-seq#8 · Filter by author Sanaya30 opened on Jun 28, 2022
  3