Issues

• import failure: OpenEBench

  upstream-outage
  research-software-ecosystem/content#4567 · Filter by author github-actions opened on Oct 4, 2026
  1

• Biotools IDs in tool metadata: how to deal with special cases

  research-software-ecosystem/content#2108 · Filter by author rioualen opened on Aug 14, 2026

• Cleaning: file names consistency

  research-software-ecosystem/content#2107 · Filter by author rioualen opened on Aug 13, 2026

• Cleaning: remove deprecated files?

  research-software-ecosystem/content#2106 · Filter by author rioualen opened on Aug 13, 2026
  1

• OpenEBench metadata dump

  research-software-ecosystem/content#2104 · Filter by author rioualen opened on Aug 13, 2026
  

• Inconsistencies in tool identifiers

  research-software-ecosystem/content#2042 · Filter by author rioualen opened on Jul 15, 2026
  3

  

• Overview of RDF dumps & issues to solve or discuss

  bioconductor-importbiocontainers-importopenebench-importworkflowhub-import
  research-software-ecosystem/content#1609 · Filter by author rioualen opened on Apr 30, 2026
  3

  

• How to annotate tool packaging entries? E. g. BioContainers, Bioconda

  research-software-ecosystem/content#1559 · Filter by author rioualen opened on Apr 27, 2026
  6

  

• Metadata from imported packages that are no longer in the original repository

  research-software-ecosystem/content#1549 · Filter by author rioualen opened on Apr 23, 2026
  1

  

• Outdated tool version - example with Hifiasm

  research-software-ecosystem/content#1548 · Filter by author scorreard opened on Apr 23, 2026
  3

• WorkflowHub metadata

  research-software-ecosystem/content#1547 · Filter by author rioualen opened on Apr 22, 2026
  4

• Reconsider placement of Governance and Roles

  research-software-ecosystem/content#1500 · Filter by author mihai-sysbio opened on Apr 9, 2026

• Create code to enable releases on github and zenodo

  research-software-ecosystem/content#1409 · Filter by author hmenager opened on Mar 25, 2026
  

• Add workflows and trainings ?

  research-software-ecosystem/content#851 · Filter by author paulzierep opened on Nov 21, 2025
  8

• Add logic to add tags from other communities

  research-software-ecosystem/content#850 · Filter by author paulzierep opened on Nov 21, 2025
  2

• Prefix directories for scalability

  research-software-ecosystem/content#633 · Filter by author joshmoore opened on Aug 16, 2023
  6

• Deal with deleted content in a provider registry

  research-software-ecosystem/content#595 · Filter by author matuskalas opened on Mar 28, 2023

• missing tools

  research-software-ecosystem/content#479 · Filter by author bgruening opened on Jan 12, 2021
  4

• Tools ecosystem processes

  research-software-ecosystem/content#455 · Filter by author hmenager opened on Oct 21, 2020
  6

  

• Public Galaxy Server and Tool Metadata

  discussionenhancementhelp wanted
  research-software-ecosystem/content#440 · Filter by author tnabtaf opened on Jul 23, 2020
  5

• Remove EDAM term labels before upload in runbiotools

  research-software-ecosystem/content#439 · Filter by author hmenager opened on Jul 23, 2020
  1

• Order uploaded tools in runbiotools to handle tool "dependencies"

  research-software-ecosystem/content#438 · Filter by author hmenager opened on Jul 23, 2020

• Weird folder with Biocontainers JSON file

  invalid
  research-software-ecosystem/content#436 · Filter by author hansioan opened on Jul 15, 2020
  7

• bioschemas generation folder

  research-software-ecosystem/content#378 · Filter by author hmenager opened on Jun 10, 2020
  1

  

• What does spread DOIs do?

  research-software-ecosystem/content#213 · Filter by author hansioan opened on Apr 8, 2020
  3