newer fitter for wrappers - #174

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lillian542 wants to merge 125 commits into

qdev-dk:masterfrom

lillian542:dismantling_fitter

Commits on May 29, 2018

initial test commit

Work
authored and
Work
committed
7d7b2c2
Update Fitclasses.py
lillian542
authored
e96e620

Commits on Jun 5, 2018

converter for legacy and SQL data to dictionary, fitter to find fit from dictionary
lillian542
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55c2081

Commits on Jun 6, 2018

Remove out of date comment
lillian542
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d07832e
Merge remote-tracking branch 'lillian/fitter_extension' into fitter_extension
lillian542
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b57eacf
Readd file removed somehow
lillian542
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7b6bd3a
fixing location to import from
lillian542
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0354584
add cut direction to fit metadata
lillian542
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e2387ad
renaming metadata for legacy converter to match pattern of SQL converter
lillian542
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4472120
takes data + fit, dictionaries, saves as new SQL dataset
lillian542
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86f8b24

Commits on Jun 7, 2018

Commits on Jun 25, 2018

Add numbering to tables if identical table names are created
lillian542
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7cdf83d
Fix bug - add missing SQL cursor in table functions
lillian542
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88528e1
Fix bug in table name that inserts data into incorrect table
lillian542
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d7a996c
Remove redundancies between data and analysis tables
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c265ad2
Print confirmation after table creation
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00c1464
Store metadata about data location and analysis in SQL database
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b0d59a1

Commits on Jun 26, 2018

Create Jupyter notebook example document for fitter
lillian542
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02c1d18
Fix bug reversing units in vertical-cut 2D fits
lillian542
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7e09565
Remove long and unnecessary outputs from Example notebook
lillian542
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8b90524
Fix bug in setting 1D plot units
lillian542
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5a51be8
Fix bug I made fixing last bug
lillian542
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73e7092
Update Example notebook after bug fixes
lillian542
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27b8a19

Commits on Jun 27, 2018

Change variable name from data_id to run_id
lillian542
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c0774c4
Add dill of fitclass to fit dictionary
lillian542
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8c5a267
Change Fitter from class to function
lillian542
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bb2cc9b
Remove default_dependencies option, require user to specify explicitly
lillian542
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357dc3d
Update Example notebook to reflect changes
lillian542
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765c750
Rename fit function to avoid confusion between function and its result
lillian542
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1394cca
Remove unnecessary header from Example notebook
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7260652
Add initial guess for parameters to fit dictionary
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d7c0df1
Add function fitted to fit dictionary metadata
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506f3dd
Remove overlooked remnants of default_dependencies
lillian542
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f7c472e
Put analysis data in experiments.db instead of separate file.
lillian542
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1c50681

Commits on Jun 28, 2018

Commits on Jun 30, 2018

Modify fitter to use function based rather than graphic/visualization based input, generalize, and move estimate calculation based on fit from SQL conversion to fitter
lillian542
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720040b

Commits on Jul 10, 2018

Add guess parameters to SQL database
lillian542
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352b736
Add dill of fitter to SQL (previously only contained fitclass
lillian542
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2d798f3

Commits on Jul 17, 2018

Throw error if count in is_table does not return 1 or 0.
lillian542
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f79b2d0
Fix while... else statement
lillian542
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cc9375a
Organize document and add comments for ease of reading
lillian542
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f7d51e1
Remove hard coded database name
lillian542
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2072321
Add clarifying comment about the new database argument
lillian542
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7c918ac
Define functions with NotImplementedError in base class, add comments
lillian542
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ee64f56
Throw error if SQL converter find_data method does not find data
lillian542
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a17cb58
Make it possible to get database from qc.config
lillian542
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676a821
Remove hard coded database name, replace with qc.config retrieval of database
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f55d723
Add manual specification of sample folder to find_experiment and find_dependencies
lillian542
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d93753b

Commits on Jul 18, 2018

Fix bug created by addition of manual samplefolder specification.
lillian542
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f7c992b
Tidy document up
lillian542
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edfcd3d
Add 'fun' and 'guess' functions with NotImplementedError in base class
lillian542
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79b5f69
Add docstring to Fitclasses
lillian542
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ddb3290
Reorganize Fitter as parent and child classes
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a12750b
Add description to Fitter class
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96f29a7
Update Example notebook to reflect changes
lillian542
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ec1c358
Remove unnecessary printing of data from Example notebook
lillian542
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98ef6d1

Commits on Aug 16, 2018

Commits on Aug 22, 2018

Commits on Aug 28, 2018

add logic for saving fits
nataliejpg
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c09c527
make it possible to specify guess params for fit
nataliejpg
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d523c37

Commits on Sep 4, 2018

measuring on t2 edits
nataliejpg
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8b77a66

Commits on Sep 5, 2018

Merge pull request #1 from nataliejpg/fitter_extension
lillian542
authored
1cdfa42

Commits on Sep 11, 2018

Add 1d plotting to fitter
lillian542
committed
d164ef8

Commits on Sep 18, 2018

2D heat map fit plots, error bars on plots, R2 fitting threshhold and power function fitclass
lillian542
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6f755f7
file name changing part 1
lillian542
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724ef5f
file name changing part 2
lillian542
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46d8e02

Commits on Sep 24, 2018

fit from run id
nataliejpg
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4409a8f

Commits on Sep 25, 2018

Commits on Sep 27, 2018

Commits on Dec 5, 2018

plot saving to be specified in config.user
nataliejpg
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28dff4e
make requirement for config.user section to be flatter
nataliejpg
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af2bf27
remove plottr import from doNd example notebook
nataliejpg
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d47932b

Commits on Jan 21, 2019

Restructure and change many things
lillian542
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4eaa5c8

Commits on Feb 12, 2019

Change fit saving to stop cutting off text box displaying fit parameters
lillian542
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29020fe
Didn't mean to add those
lillian542
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7a4a501
Change analysis dataset name from analysis to results
lillian542
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08cfb21

Commits on Feb 19, 2019

Commits on Feb 27, 2019

Fix typo
lillian542
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432cc29

Commits on Mar 15, 2019

Fix import statements
lillian542
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db55a92

Commits on Apr 9, 2019

Commits on Apr 11, 2019

Commits on Apr 13, 2019

Commits on Sep 17, 2019

hacky solution to circumvent new db stucture: doesnt work for 2d plotting
nataliejpg
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beff185

Commits on Sep 19, 2019

update data extraction to work with new data storing
nataliejpg
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77679e0

Commits on Jan 28, 2020

allow loading from one database and saving to another
nataliejpg
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2dba960