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Eupathpopgen - #2278
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Eupathpopgen#2278
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Reuse the drugres allele table and population assignment so related PlasmoGenEpi pipelines exercise the same inputs. Co-authored-by: Cursor <cursoragent@cursor.com>
jfy133
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Sep 26, 2026
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| [^1]: From [stackoverflow](https://stackoverflow.com/a/60846265/11502856) | ||
| - `testdata/allele_table.tsv`: Microhaplotype allele table (`specimen_name`, `target_name`, `reads`, `seq`, plus optional `bioinformatics_run_name` / `allele` columns from the drugres extract). |
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This is rather minimal, I highly recommend you provide more information/detailed description of where the files came from/how they were generated - can be useful if files/got history gets corrupted etc
jfy133
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Sep 29, 2026
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I would personally prefer to see the accessions, commands ,tool versions for how it was generated - but this is me being picky as I know a lot of people aren't as strict so I'll approve it :) (but something in mind for the future maybe)
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Adding test data for the eupathpopgen pipeline