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Add modkit/dmr module - #13021

Open

YannVRB wants to merge 9 commits into

nf-core:masterfrom

YannVRB:add-modkit-dmr

Open

Add modkit/dmr module#13021
YannVRB wants to merge 9 commits into
nf-core:masterfrom
YannVRB:add-modkit-dmr

Commits on Sep 23, 2026
- Add modkit/dmr module
  
  YannVRB
  and
  claude
  committed
  9d93dfa
Commits on Sep 24, 2026
- Merge branch 'master' into add-modkit-dmr
  ljwharbers
  authored
  ad5cc9c
- Add EDAM ontologies to modkit/dmr's meta.yml
  
  YannVRB
  and
  claude
  committed
  303926f
- Generate modkit/dmr's bedmethyl test fixture in-test instead of committing one
  
  YannVRB
  and
  claude
  committed
  0eeb097
- Fix empty -stub test: handle modkit pileup's unsplit stub output
  
  YannVRB
  and
  claude
  committed
  d886465
Commits on Sep 28, 2026
- Assert log-file existence instead of snapshotting its content
  
  YannVRB
  and
  claude
  committed
  f574d7a
Commits on Sep 29, 2026
- Update snapshot assertions for version in main.nf.test
  manascripts
  authored
  25d5ea8
- Complete manascripts's lint fix: apply to the stub test too, regenerate snapshots
  
  YannVRB
  and
  claude
  committed
  0a6dc10
Commits on Sep 30, 2026
- Accept an optional fai alongside fasta, to avoid rebuilding it every run
  
  YannVRB
  and
  claude
  committed
  fbbd19f