✨ Add atomic BQSKit passes

[flowerthrower]

Description

Previously, the BQSKit actions were large subroutines using BQSKit's compile (similar to Qiskit's full transpile pipeline). This PR removes those and instead adds more atomic BQSKit actions that minimizes composite compilation actions.

Fixes #673

Checklist

• The pull request only contains commits that are focused and relevant to this change.
• I have added appropriate tests that cover the new/changed functionality.
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