RSNA-MICCAI Brain Tumor Radiogenomic Classification

Getting Started

Installation

1. Clone this repository

   git clone https://github.com/magnusbarata/brain-tumor-classification.git
   cd brain-tumor-classification

2. Install the dependencies

   docker build -t tf-gpu setup
   docker run --gpus all -u $(id -u):$(id -g) -it --rm -v $(pwd):/work tf-gpu bash

Train

1. Download the data and put it inside data directory.
2. Set the hyperparameter file and start training.

   python train.py <EXP_DIR>

3. Monitor using tensorboard.

   tensorboard --logdir <EXP_DIR>/logs