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SQMtools R package Error in file.exists.zip(contigs_vecfile)

Status: Open.

#1041 In jtamames/SqueezeMeta;

· bark9299 opened on Jul 10, 2026

make_databases.pl "No host could be reached! at /SqueezeMeta/lib/install_utils/get_host.pl line 19. "

Status: Open.

#1040 In jtamames/SqueezeMeta;

· aparrascab opened on Jul 9, 2026

Stopping in STEP1 -> 01.run_all_assemblies.pl. Program finished abnormally (Spades)

Status: Open.

#1039 In jtamames/SqueezeMeta;

· mohitsharma-123 opened on Jul 5, 2026

Step 9 failing due to .contiglog being empty

Status: Open.

#1038 In jtamames/SqueezeMeta;

· sarahclarke44 opened on Jun 25, 2026

download_databases.pl failing

Status: Open.

#1034 In jtamames/SqueezeMeta;

· nadiiaqueraltt opened on Jun 9, 2026

Crashing at STEP17 checkbins

Status: Open.

#1033 In jtamames/SqueezeMeta;

· Courtneyring21 opened on May 12, 2026

Crash when creating summary tables

Status: Open.

#1028 In jtamames/SqueezeMeta;

· fpusan opened on Apr 28, 2026

Unknown option: force_overwrite for sqm_reads.pl

enhancementNew feature or requestNew feature or request

SQM_reads

Status: Open.

#1015 In jtamames/SqueezeMeta;

· SimonChen1997 opened on Jan 22, 2026

Add a --notax flag to SqueezeMeta, sqm_reads and sqm_longreads

enhancementNew feature or requestNew feature or request

Status: Open.

#966 In jtamames/SqueezeMeta;

· fpusan opened on Apr 7, 2025

Feature Request: Gene Clustering for Non-Redundant Gene Catalog

Status: Open.

#919 In jtamames/SqueezeMeta;

· fconstancias opened on Jan 8, 2025

Workflow, tool version outline

enhancementNew feature or requestNew feature or request

Status: Open.

#825 In jtamames/SqueezeMeta;

· s-junguy opened on Apr 11, 2024

"zip file is corrupt" when loading a zipped project into SQMtools

bugSomething isn't workingSomething isn't working

SQMtools

Status: Open.

#755 In jtamames/SqueezeMeta;

· fpusan opened on Nov 19, 2023