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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    R 816 162

  2. scde scde Public

    R package for analyzing single-cell RNA-seq data

    R 177 66

  3. viv viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 330 57

  4. vizarr vizarr Public

    A minimal Zarr image viewer based on Viv.

    TypeScript 176 37

  5. CHIEF CHIEF Public

    Clinical Histopathology Imaging Evaluation Foundation Model

    Python 683 112

Repositories

Showing 10 of 385 repositories
  • avillachlab-jenkins-bdc-etl Public
    hms-dbmi/avillachlab-jenkins-bdc-etl’s past year of commit activity
    Shell 0 Apache-2.0 0 0 0 Updated Jan 10, 2026
  • i2b2v2-webclient Public
    hms-dbmi/i2b2v2-webclient’s past year of commit activity
    JavaScript 2 5 1 2 Updated Jan 9, 2026
  • avillachlab-pic-sure-splunk-template Public

    Dashboard templates for Splunk 8.0

    hms-dbmi/avillachlab-pic-sure-splunk-template’s past year of commit activity
    Shell 0 Apache-2.0 1 0 0 Updated Jan 9, 2026
  • pic-sure-hpds Public
    hms-dbmi/pic-sure-hpds’s past year of commit activity
    Java 3 Apache-2.0 7 0 2 Updated Jan 9, 2026
  • pic-sure-bdc-release-control Public
    hms-dbmi/pic-sure-bdc-release-control’s past year of commit activity
    1 Apache-2.0 8 0 0 Updated Jan 9, 2026
  • pic-sure-auth-microapp Public
    hms-dbmi/pic-sure-auth-microapp’s past year of commit activity
    Java 4 Apache-2.0 6 0 3 Updated Jan 9, 2026
  • viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    hms-dbmi/viv’s past year of commit activity
    JavaScript 330 MIT 57 57 (1 issue needs help) 18 Updated Jan 9, 2026
  • picsure-dictionary-etl Public
    hms-dbmi/picsure-dictionary-etl’s past year of commit activity
    Java 1 Apache-2.0 0 0 0 Updated Jan 9, 2026
  • ETL-MissionControl-dbgap-submodule Public

    ETL-MissionControl-dbgap-submodule

    hms-dbmi/ETL-MissionControl-dbgap-submodule’s past year of commit activity
    Python 0 Apache-2.0 0 0 1 Updated Jan 9, 2026
  • ETLToolSuite-EntityGenerator Public

    This tool will generate Entity Files that can be used to load into Datasources.

    hms-dbmi/ETLToolSuite-EntityGenerator’s past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated Jan 9, 2026
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