With this command, I'm encountering an error:
/usr/local/anaconda/lib/python3.9/site-packages/gemBS/gemBSbinaries/bs_call -r /ref/hg38_no_alt.gemBS.ref \
-n TGACCA \
--contig-bed /out_dir///calls/TGACCA/contigs_TGACCA_chr4.bed \
--contig-sizes /ref/hg38_no_alt.contig.sizes \
--report-file /out_dir///calls/TGACCA/TGACCA_chr4.json \
--right-trim 0 \
--left-trim 0 \
-k \
--conversion 0.0237,0.0500 \
--reference-bias 2 \
--mapq-threshold 10 \
--bq-threshold 13 \
-t 16 \
-O b \
-o /out_dir///calls/TGACCA/TGACCA_chr4.bcf \
/out_dir///mapping/TGACCA/TGACCA.bamAdditional threads: 7 4 5
Loading reference sequence index
Sequence index read in successfully
Opened /out_dir///mapping/TGGCGC/TGGCGC.bam for input (Index)
Processing region chr4:1-190214555
Processing chromosome chr4 (OK)
Loading reference for chr4
len = 190214555
Read in 190204555 bases on chr4 from 10001 - 190214555, stored in 76081824 bytes
> System.Error::Signal raised (no=11)
Are there any other log files generated where I can troubleshoot the origin of this System.Error::Signal raised (no=11) error?
With this command, I'm encountering an error:
/usr/local/anaconda/lib/python3.9/site-packages/gemBS/gemBSbinaries/bs_call -r /ref/hg38_no_alt.gemBS.ref \ -n TGACCA \ --contig-bed /out_dir///calls/TGACCA/contigs_TGACCA_chr4.bed \ --contig-sizes /ref/hg38_no_alt.contig.sizes \ --report-file /out_dir///calls/TGACCA/TGACCA_chr4.json \ --right-trim 0 \ --left-trim 0 \ -k \ --conversion 0.0237,0.0500 \ --reference-bias 2 \ --mapq-threshold 10 \ --bq-threshold 13 \ -t 16 \ -O b \ -o /out_dir///calls/TGACCA/TGACCA_chr4.bcf \ /out_dir///mapping/TGACCA/TGACCA.bamAre there any other log files generated where I can troubleshoot the origin of this
System.Error::Signal raised (no=11)error?