GENPAT (Italian National Reference Centre for WGS of microbial pathogens)
- 9 followers
- Teramo, Abruzzo, Italy
- https://genpat.izs.it/
- genomica@izs.it
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cgmlst-dists-py
cgmlst-dists-py PublicHigh-performance pairwise Hamming distance calculator for cgMLST data with GPU acceleration
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wiki-engine
wiki-engine PublicA Docker-based documentation system combining MkDocs and Word document generation.
Python 1
Repositories
- ohe-rs Public
Ultra-fast one-hot encoding for bioinformatics and ML, powered by Rust + CUDA. Built for cgMLST allele profiles and large-scale categorical data.
genpat-it/ohe-rs’s past year of commit activity - dist2mst Public
High-performance Minimum Spanning Tree construction from distance matrices with Numba acceleration
genpat-it/dist2mst’s past year of commit activity - chewcall Public
Fast allele caller for cgMLST/wgMLST schemas, compatible with chewBBACA. 6-10x faster with SIMD Smith-Waterman (parasail).
genpat-it/chewcall’s past year of commit activity - cgmlst-dists-py Public
High-performance pairwise Hamming distance calculator for cgMLST data with GPU acceleration
genpat-it/cgmlst-dists-py’s past year of commit activity - cohesive-llm Public
Self-hostable AI platform that generates Nextflow DSL2 pipelines for the cohesive-ngsmanager framework
genpat-it/cohesive-llm’s past year of commit activity - wiki-engine Public
A Docker-based documentation system combining MkDocs and Word document generation.
genpat-it/wiki-engine’s past year of commit activity - cohesive-cmdbuild-builder Public
genpat-it/cohesive-cmdbuild-builder’s past year of commit activity - coreguard Public
CoreGuard - SNP comparison visualization tool for multi-pipeline genomic analysis. Compare SNP calls from different variant calling pipelines (Snippy, CFSAN, etc.) against ground truth and visualize discordances.
genpat-it/coreguard’s past year of commit activity
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