tools_survivor.cwl

Documentation for survivor.cwl

This page is auto-generated. Do not edit.

Overview

Run SURVIVOR to merge SV calls

Docker Requirement

mgibio/survivor-cwl:1.0.6.2

Inputs

Name	Label	Description	Type	Secondary Files
vcfs		Array of VCFs to merge SV calls of	File[]
max_distance_to_merge		Maximum distance of variants to consider for merging	int
minimum_sv_calls		Minimum number of sv calls needed to be merged	int
same_type		Require merged SVs to be of the same type	boolean
same_strand		Require merged SVs to be on the same strand	boolean
estimate_sv_distance		Estimate distance based on the size of SV	boolean
minimum_sv_size		Minimum size of SVs to merge	int
cohort_name		Used to generate the output file name	string?

Outputs

Name	Label	Description	Type	Secondary Files
merged_vcf			File