feat: Automate configuration YAML generation (Resolves #24)#43
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Resolves draeger-lab#24. Introduces scripts/sync_configs.py to automatically parse hqtb_config_default.yaml and generate basic and advanced variations, stripping dev tags (@todo, @IdEA) and omitting advanced parameter blocks.
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Description
This PR addresses Issue #24 to improve QoL for developers maintaining configuration files[cite: 8]. Instead of maintaining
basic,advanced, anddefaultYAMLs manually and risking inconsistencies, a Python script has been added to automate the generation process[cite: 8].Key Changes
scripts/sync_configs.py.# @IDEA,# @TODO,# @DEV)[cite: 7, 8].refinement_cleanup,GeneGapFiller,mcc) to create a minimal "quick-and-dirty" file[cite: 7, 8].Usage
Developers only need to edit
src/specimen/data/config/hqtb_config_default.yaml, then run:python scripts/sync_configs.pyfrom the root directory to safely overwrite and sync the advanced and basic configuration files.