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Issue with RSEM Index Construction for Cocos nucifera

Status: Open.

#232 In deweylab/RSEM;

· biocai123 opened on Nov 20, 2025

rsem-tbam2gbam cannot handle SEQ="*" even when none present in unsorted .bam file

Status: Open.

#231 In deweylab/RSEM;

· MatthewRalston opened on Oct 31, 2025

Version number in rsem_perl_utils.pm not updated in v1.3.3 release?

Status: Open.

#227 In deweylab/RSEM;

· rquincyr opened on Jun 25, 2025

Issue with Generating Paired-End Model from Real FASTQ Files

Status: Open.

#226 In deweylab/RSEM;

· QianhuiWan opened on Mar 26, 2025

get zero count in result files

Status: Open.

#225 In deweylab/RSEM;

· wangduo-ux opened on Mar 26, 2025

RSEM bam

Status: Open.

#224 In deweylab/RSEM;

· MarcelloMalpighi opened on Dec 25, 2024

rsem-extract-reference-transcripts fails with "Error Message: Strand is neither '+' nor '-'!"

Status: Open.

#220 In deweylab/RSEM;

· J-Moravec opened on Aug 21, 2024

Single-end fragment length mean and SD

Status: Open.

#219 In deweylab/RSEM;

· byqmed opened on Jul 30, 2024

Not sure if rsem is using --num-threads option...

Status: Open.

#217 In deweylab/RSEM;

· siyer-broad opened on Jun 25, 2024

bam only containing aligned reads produced different expression profile

Status: Open.

#216 In deweylab/RSEM;

· TwoFlowers1 opened on May 24, 2024

rsem-generate-ngvector command not found

Status: Open.

#215 In deweylab/RSEM;

· yma122 opened on May 3, 2024

Gtf file

Status: Open.

#212 In deweylab/RSEM;

· luisafmc opened on Apr 1, 2024