Search results

Request for correction: ProteinMPNN manifest draft in OpenSciFlow

Status: Open.

#151 In dauparas/ProteinMPNN;

· kkkniengLiu opened on Jul 6, 2026

ProteinMPNN appears to modify fixed target sequence during peptide design workflow

Status: Open.

#149 In dauparas/ProteinMPNN;

· hyejeongchoi-rgb opened on Apr 24, 2026

Problem: --chain_id_jsonl and --fixed_positions_jsonl not working as expected (both chains designed)

Status: Open.

#148 In dauparas/ProteinMPNN;

· jiaanqiang opened on Apr 8, 2026

the difference between the conditional_probs_only_backbone mode and the unconditional_probs_only mode

Status: Open.

#147 In dauparas/ProteinMPNN;

· Zhongyihang11 opened on Mar 18, 2026

[Documentation] Simpler explanation?

Status: Open.

#145 In dauparas/ProteinMPNN;

· rubyFeedback opened on Jan 28, 2026

homooligomer and different length

Status: Open.

#144 In dauparas/ProteinMPNN;

· MrGao1997 opened on Dec 22, 2025

What should "--num_examples_per_epoch" be set to?

Status: Open.

#142 In dauparas/ProteinMPNN;

· kosonocky opened on Dec 3, 2025

Best Practices for Large-Scale ProteinMPNN → FastRelax Runs: Are Per-Backbone Designs Truly Independent?

Status: Open.

#141 In dauparas/ProteinMPNN;

· kimlab-cnu opened on Nov 29, 2025

Output interpretation

Status: Open.

#139 In dauparas/ProteinMPNN;

· Mossy-Frog opened on Nov 7, 2025

Security audit results

Status: Open.

#138 In dauparas/ProteinMPNN;

· TimCraigCGPS opened on Oct 20, 2025

Possible bug in model initialization (num_decoder_layers)

Status: Open.

#136 In dauparas/ProteinMPNN;

· Snail-TI opened on Aug 26, 2025

Do amino acid types specified in the input backbone PDB file affect the designed result?

Status: Open.

#135 In dauparas/ProteinMPNN;

· daniel-dpq opened on Aug 18, 2025