Skip to content
View danilodileo's full-sized avatar
5 followers · 2 following

Achievements

Achievement: Pair Extraordinairex3Achievement: Pull Sharkx3Achievement: YOLOAchievement: Quickdraw

Achievements

Achievement: Pair Extraordinairex3Achievement: Pull Sharkx3Achievement: YOLOAchievement: Quickdraw

Block or report danilodileo

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Content in all repositories owned by your account will be closed.
Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
danilodileo/README.md

Danilo Di Leo

Bioinformatics researcher in marine microbial ecology, metagenomics & multi-omics

Open to new opportunities in bioinformatics, data science, and computational biology.

Focus

  • Metagenomics, metatranscriptomics, metaproteomics, multi-omics integration
  • Reproducible pipeline development (Nextflow / nf-core)
  • Marine microbial community ecology

nf-core

Developer / Author

Contributions

  • nf-core/phyloplace - best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.
  • nf-core/ampliseq - Amplicon sequencing analysis workflow using DADA2 and QIIME2

Toolbox

R/Bioconductor · Python · Nextflow · Bash · SQL · AWS · Linux/HPC

Connect

LinkedIn · Website

Pinned Loading

  1. nf-core/metatdenovo nf-core/metatdenovo Public

    Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.

    Nextflow 36 21

  2. nf-core/magmap nf-core/magmap Public

    Best-practice analysis pipeline for mapping reads to a (large) collections of genomes

    Nextflow 13 6

  3. envision_rhodopsin_meta_study envision_rhodopsin_meta_study Public

    Metatranscriptomic analysis of rhodopsin expression in a genomic context from datasets collected in the northeast of Spain.

    TeX

  4. 16S-template-analysis 16S-template-analysis Public

    16S/18S amplicon (ASV-based) diversity, taxonomic profiling, and ML toolkit — diversity ecology, differential abundance, real QIIME2 Moving Pictures case study

    Python