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Replace Tree and TreeNode by networkx functionality #903

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@padix-key

Originally Tree and TreeNode were created to represent guide trees for multiple sequence alignments and dendrograms. However, with networkx being a dependency now, we can remove these classes and instead use netoworkxgraphs. This would also circumvent fixing #397.

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  1. added
    major releasePotentially backwards incompatible changes that should go in to the next major release
    on Sep 11, 2026
  2. added 6 commits that reference this issue on Sep 20, 2026
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  3. padix-key commented on Sep 23, 2026

    @padix-key
    MemberAuthor

    Resolved by #944

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    major releasePotentially backwards incompatible changes that should go in to the next major release

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