Issues

• Magi 2 - Refactor pathing of database to be relative to scripts so not to require setup.py if code is moved

  biorack/magi#60 · Filter by author mwang87 opened on Sep 9, 2021

• Can't open magi_workflow.py when running the script run_full_workflow_test.sh

  biorack/magi#59 · Filter by author vitorlimac2 opened on Oct 20, 2020
  8

• MAGI 2.0 Stereospecifity

  biorack/magi#56 · Filter by author hleegwater opened on Jan 15, 2020

• Multiprocessing problems in new workflow

  biorack/magi#53 · Filter by author hleegwater opened on Oct 18, 2019

• MAGI/User problems with accepting DNA/RNA

  biorack/magi#52 · Filter by author hleegwater opened on Oct 16, 2019

• MAGI on Windows

  biorack/magi#47 · Filter by author hleegwater opened on Oct 9, 2019
  2

• Make magi_workflow --help function more informative

  documentation
  biorack/magi#44 · Filter by author hleegwater opened on Oct 8, 2019
  2

• Accurate_mass_search

  feature
  biorack/magi#43 · Filter by author hleegwater opened on Oct 4, 2019
  3

• Confirm that use of BLAST's -max_target_seqs is intentional

  biorack/magi#40 · Filter by author armish opened on Sep 29, 2018

• gene-only results have duplicate gene-reactions in output

  bug
  biorack/magi#39 · Filter by author oerbilgin opened on Nov 15, 2017
  

• allow reactions to replace genes

  feature
  biorack/magi#38 · Filter by author oerbilgin opened on Oct 26, 2017
  

• Incorporate metabolic model module

  biorack/magi#37 · Filter by author oerbilgin opened on Oct 12, 2017 · New compound, reaction, gene databases

• Replace all use of current database with new tables

  biorack/magi#36 · Filter by author oerbilgin opened on Oct 12, 2017 · New compound, reaction, gene databases
  

• Build new data tables

  biorack/magi#35 · Filter by author oerbilgin opened on Oct 12, 2017 · New compound, reaction, gene databases
  

• allow gene input to also be reaction input

  enhancementfeature
  biorack/magi#34 · Filter by author oerbilgin opened on Oct 12, 2017
  

• Lower memory usage during final score calculation

  efficiencyenhancement
  biorack/magi#29 · Filter by author oerbilgin opened on Oct 2, 2017
  

• Lower memory during compound to reaction search

  efficiencyenhancement
  biorack/magi#28 · Filter by author oerbilgin opened on Oct 2, 2017
  

• Make final table merging more efficient

  efficiencyenhancement
  biorack/magi#18 · Filter by author oerbilgin opened on Sep 27, 2017 · Make MAGI Faster

• Precompute all IMG genomes

  efficiencyenhancement
  biorack/magi#16 · Filter by author oerbilgin opened on Sep 27, 2017 · Make MAGI Faster

• Cache BLAST results

  efficiencyenhancement
  biorack/magi#15 · Filter by author oerbilgin opened on Sep 27, 2017 · Make MAGI Faster