- Christophe Pradal
- Yann Boursiac
- Mikael Lucas
- Fabrice Bauget
- Christophe Godin
- Christophe Maurel
CIRAD / INRAE / inria / CNRS
Python package
CecILL-C
URL : https://hydroroot.rtfd.io
OpenAlea.HydroRoot is a hydraulic root architecture modelling and a root architecture system generator package.
The OpenAlea.HydroRoot package contains a root architecture simulation model coupled with a water and solute transport solver. It contains a pure hydraulic solver that is solved using resistance network analogy. It also contains a water and solute transport solver that is more complex and see the root as a continuous medium.
Heat map representation of the incoming local radial flows on an arabidopsis root.
conda create -n hydroroot -c conda-forge -c openalea3 openalea.hydroroot
- openalea.mtg
- openalea.plantgl
- RSML
- pandas > 0.17
- numpy
- scipy
See notebook in example directory.
If you use Hydroroot for your research, please cite:
- Yann Boursiac, Christophe Pradal, Fabrice Bauget, Mikaël Lucas, Stathis Delivorias, Christophe Godin, Christophe Maurel, Phenotyping and modeling of root hydraulic architecture reveal critical determinants of axial water transport, Plant Physiology, Volume 190, Issue 2, October 2022, Pages 1289--1306, https://doi.org/10.1093/plphys/kiac281
- Fabrice Bauget, Virginia Protto, Christophe Pradal, Yann Boursiac, Christophe Maurel, A root functional--structural model allows assessment of the effects of water deficit on water and solute transport parameters, Journal of Experimental Botany, Volume 74, Issue 5, 13 March 2023, Pages 1594--1608, https://doi.org/10.1093/jxb/erac471