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How does SKA calculate GC% ?

Status: Open.

#111 In bacpop/ska.rust;

· tseemann opened on Mar 16, 2026

Spindle and kinetochore-associated protein 2

Status: Open.

#110 In bacpop/ska.rust;

· tseemann opened on Mar 16, 2026

Issue running ska distance with pandas >=3

Status: Open.

#109 In bacpop/ska.rust;

· kristyhoran opened on Mar 12, 2026

Need 500 GB of RAm for 2000 assemblies?

Status: Open.

#108 In bacpop/ska.rust;

· tseemann opened on Feb 16, 2026

Rust compilation requirements

Status: Open.

#102 In bacpop/ska.rust;

· verdurin opened on Nov 20, 2025

Possible column label mix-up and unexpected self-comparison distance in SKA2

Status: Open.

#96 In bacpop/ska.rust;

· taffners opened on May 22, 2025

suggestion: new input option for ska build (1 file containing n isolates)

Status: Open.

#94 In bacpop/ska.rust;

· rderelle opened on Apr 8, 2025

How to best call variants with ska lo?

Status: Open.

#93 In bacpop/ska.rust;

· rrwick opened on Mar 5, 2025

Possible run with k gretter than 63

enhancementNew feature or requestNew feature or request

not plannedThis will not be worked onThis will not be worked on

Status: Open.

#83 In bacpop/ska.rust;

· kebern opened on Oct 16, 2024

Possible faster bloom filter

Status: Open.

#78 In bacpop/ska.rust;

· johnlees opened on Aug 5, 2024

Possible changes to fastq input

enhancementNew feature or requestNew feature or request

Status: Open.

#52 In bacpop/ska.rust;

· johnlees opened on Aug 14, 2023

Feature requests: different mixture model; combined ska build & cov

enhancementNew feature or requestNew feature or request

Status: Open.

#50 In bacpop/ska.rust;

· rderelle opened on Jul 20, 2023