Hello!
I have this conda environment with the following packages:
active environment : bioinformatics-env
active env location : /Users/julia/miniconda3/envs/bioinformatics-env
shell level : 1
user config file : /Users/julia/.condarc
populated config files : /Users/julia/.condarc
conda version : 23.7.4
conda-build version : not installed
python version : 3.9.18.final.0
virtual packages : __archspec=1=x86_64
__osx=10.16=0
__unix=0=0
base environment : /Users/julia/miniconda3 (writable)
conda av data dir : /Users/julia/miniconda3/etc/conda
conda av metadata url : None
channel URLs : https://conda.anaconda.org/conda-forge/osx-64
https://conda.anaconda.org/conda-forge/noarch
https://conda.anaconda.org/bioconda/osx-64
https://conda.anaconda.org/bioconda/noarch
https://repo.anaconda.com/pkgs/main/osx-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/osx-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /Users/julia/miniconda3/pkgs
/Users/julia/.conda/pkgs
envs directories : /Users/julia/miniconda3/envs
/Users/julia/.conda/envs
platform : osx-64
user-agent : conda/23.7.4 requests/2.31.0 CPython/3.9.18 Darwin/20.6.0 OSX/10.16
UID:GID : 501:20
netrc file : None
offline mode : False
Packages:
Name Version Build Channel
_r-mutex 1.0.1 anacondar_1 conda-forge
appnope 0.1.3 pyhd8ed1ab_0 conda-forge
argon2-cffi 21.1.0 py36hfa26744_0 conda-forge
asttokens 2.4.0 pyhd8ed1ab_0 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 pyhd8ed1ab_3 conda-forge
backports.functools_lru_cache 1.6.5 pyhd8ed1ab_0 conda-forge
bamtools 2.5.2 hdf58011_2 bioconda
bash 4.4.18 h1765d9f_1000 conda-forge
bash_kernel 0.9.0 pyh1a96a4e_0 conda-forge
bcftools 1.5 3 bioconda
bcrypt 3.2.0 py36hfa26744_1 conda-forge
bedtools 2.31.0 h6372da2_3 bioconda
biopython 1.79 py36hfa26744_0 conda-forge
blas 1.0 mkl conda-forge
bleach 6.1.0 pyhd8ed1ab_0 conda-forge
blosc 1.21.5 heccf04b_0 conda-forge
boost-cpp 1.70.0 hd59e818_1 conda-forge
bowtie2 2.5.1 py36hde6f128_1 bioconda
brotlipy 0.7.0 py36hfa26744_1001 conda-forge
bwa 0.7.17 h45fc8d7_11 bioconda
bwidget 1.9.14 h694c41f_1 conda-forge
bzip2 1.0.8 h0d85af4_4 conda-forge
ca-certificates 2023.7.22 h8857fd0_0 conda-forge
cairo 1.16.0 h0ab9d94_1001 conda-forge
cctools_osx-64 949.0.1 hc7db93f_25
certifi 2021.5.30 py36h79c6626_0 conda-forge
cffi 1.14.0 py36hb5b8e2f_0
charset-normalizer 2.0.4 pyhd3eb1b0_0
clang 12.0.0 hecd8cb5_2
clang-12 12.0.0 default_hfcad0e5_2
clang_osx-64 12.0.0 h7ad7729_2
clangxx 12.0.0 default_hfcad0e5_2
clangxx_osx-64 12.0.0 he0c6f94_2
compiler-rt 12.0.0 hd87ff74_2
compiler-rt_osx-64 12.0.0 hfb26b64_2
cryptography 3.4.8 py36h3d45be8_0 conda-forge
curl 7.67.0 ha441bb4_0
cycler 0.11.0 pyhd8ed1ab_0 conda-forge
dbus 1.13.6 h2f22bb5_0 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
docutils 0.13.1 py36_0 conda-forge
dropbox 11.36.2 pyhd8ed1ab_0 conda-forge
ecdsa 0.18.0 pyhd8ed1ab_0 conda-forge
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
executing 1.2.0 pyhd8ed1ab_0 conda-forge
expat 2.5.0 hf0c8a7f_1 conda-forge
fastqc 0.12.1 hdfd78af_0 bioconda
filechunkio 1.8 py_2 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
fontconfig 2.13.94 h10f422b_0 conda-forge
freetype 2.12.1 h60636b9_2 conda-forge
fribidi 1.0.10 hbcb3906_0 conda-forge
ftputil 5.0.4 pyhd8ed1ab_0 conda-forge
gettext 0.21.1 h8a4c099_0 conda-forge
gfortran_osx-64 4.8.5 h22b1bf0_8 conda-forge
glib 2.63.1 hd977a24_0
graphite2 1.3.13 h2e338ed_1001 conda-forge
gsl 2.6 h71c5fe9_2 conda-forge
harfbuzz 2.4.0 h831d699_0
hdf5 1.10.5 nompi_h0cbb7df_1103 conda-forge
icu 58.2 h0a44026_1000 conda-forge
idna 3.4 pyhd8ed1ab_0 conda-forge
importlib_metadata 1.5.0 py36_0 conda-forge
importlib_resources 5.1.3 py36h79c6626_0 conda-forge
intel-openmp 2023.1.0 ha357a0b_43547
ipykernel 5.5.5 py36h495a4c6_0 conda-forge
ipython 6.5.0 py36_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 7.3.0 py36_0 conda-forge
jedi 0.10.2 py36_0 conda-forge
jinja2 2.11.3 pyhd8ed1ab_2 conda-forge
jpeg 9e hb7f2c08_3 conda-forge
json5 0.9.6 pyhd3eb1b0_0
jsonschema 2.6.0 py36_1002 conda-forge
jupyter_client 7.1.2 pyhd8ed1ab_0 conda-forge
jupyter_core 4.8.1 py36h79c6626_0 conda-forge
kiwisolver 1.3.1 py36hc61eee1_1 conda-forge
krb5 1.16.4 h1752a42_0 conda-forge
lcms2 2.12 h577c468_0 conda-forge
ld64_osx-64 530 h70f3046_23
ldid 2.1.2 h6a69015_3 conda-forge
lerc 4.0.0 hb486fe8_0 conda-forge
libblas 3.9.0 12_osx64_mkl conda-forge
libcblas 3.9.0 12_osx64_mkl conda-forge
libclang-cpp12 12.0.0 default_hfcad0e5_2
libcurl 7.67.0 h051b688_0
libcxx 16.0.6 hd57cbcb_0 conda-forge
libdeflate 1.18 hac1461d_0 conda-forge
libedit 3.1.20191231 h0678c8f_2 conda-forge
libexpat 2.5.0 hf0c8a7f_1 conda-forge
libffi 3.2.1 hb1e8313_1007 conda-forge
libgfortran 3.0.1 0 conda-forge
libiconv 1.17 hac89ed1_0 conda-forge
liblapack 3.9.0 12_osx64_mkl conda-forge
libllvm12 12.0.0 h9b2ccf5_3
libllvm14 14.0.6 hc8e404f_4 conda-forge
libpng 1.6.39 ha978bb4_0 conda-forge
libsodium 1.0.18 hbcb3906_1 conda-forge
libssh2 1.10.0 hdb2fb19_2
libtiff 4.2.0 h1167814_3 conda-forge
libwebp-base 1.3.2 h0dc2134_0 conda-forge
libxml2 2.10.4 h930c0e2_0
libxslt 1.1.37 h5d22bc9_0 conda-forge
libzlib 1.2.13 h8a1eda9_5 conda-forge
llvm-openmp 17.0.2 hff08bdf_0 conda-forge
llvm-tools 12.0.0 h9b2ccf5_3
lxml 4.6.3 py36habcf893_0 conda-forge
lz4-c 1.9.4 hf0c8a7f_0 conda-forge
make 4.3 h22f3db7_1 conda-forge
markupsafe 1.1.1 py36hfa26744_3 conda-forge
matplotlib 3.3.4 py36h79c6626_0 conda-forge
matplotlib-base 3.3.4 py36h4ea959b_0 conda-forge
mistune 0.8.4 pyh1a96a4e_1006 conda-forge
mkl 2021.4.0 h89fa619_689 conda-forge
mkl-service 2.4.0 py36hfa26744_0 conda-forge
mkl_fft 1.3.0 py36h4a7008c_2
mkl_random 1.2.2 py36hb2f4e1b_0
mock 5.1.0 pyhd8ed1ab_0 conda-forge
nbconvert 5.6.1 py36h9f0ad1d_1 conda-forge
nbformat 5.1.3 pyhd8ed1ab_0 conda-forge
ncurses 6.4 hf0c8a7f_0 conda-forge
nest-asyncio 1.5.8 pyhd8ed1ab_0 conda-forge
notebook 6.3.0 py36h79c6626_0 conda-forge
numexpr 2.7.3 py36h7083def_0 conda-forge
numpy 1.16.6 py36h300780c_3
numpy-base 1.16.6 py36h4850c68_3
olefile 0.46 pyh9f0ad1d_1 conda-forge
openjdk 20.0.2 h7d26f99_2 conda-forge
openssl 1.1.1w h8a1eda9_0 conda-forge
packaging 21.3 pyhd8ed1ab_0 conda-forge
pandas 1.1.5 py36h2be6da3_0 conda-forge
pandoc 2.19.2 h694c41f_2 conda-forge
pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge
pango 1.42.4 haa940fe_4 conda-forge
paramiko 1.18.2 py36_0 conda-forge
parso 0.8.3 pyhd8ed1ab_0 conda-forge
patsy 0.5.3 pyhd8ed1ab_0 conda-forge
pcre 8.45 he49afe7_0 conda-forge
perl 5.32.1 4_h0dc2134_perl5 conda-forge
pexpect 4.8.0 pyh1a96a4e_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pillow 7.2.0 py36h79df3f4_2 conda-forge
pip 20.0.2 py36_1 conda-forge
pixman 0.38.0 h01d97ff_1003 conda-forge
ply 3.11 py_1 conda-forge
prometheus_client 0.17.1 pyhd8ed1ab_0 conda-forge
prompt_toolkit 1.0.15 py_1 conda-forge
psutil 4.4.2 py36_0 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pycrypto 2.6.1 py36ha3de816_1005 conda-forge
pycurl 7.43.0.5 py36h16304de_2 conda-forge
pygments 2.12.0 pyhd8ed1ab_0 conda-forge
pynacl 0.3.0 py36_0 bioconda
pyobjc-core 7.3 py36hfa26744_2 conda-forge
pyobjc-framework-cocoa 6.2 py36h9f0ad1d_1 conda-forge
pyopenssl 20.0.1 pyhd8ed1ab_0 conda-forge
pyparsing 3.1.1 pyhd8ed1ab_0 conda-forge
pyqt 5.9.2 py36h2a560b1_4 conda-forge
pysftp 0.2.9 py_1 conda-forge
pysocks 1.7.1 py36h79c6626_3 conda-forge
pytables 3.6.1 py36h6f8395a_1 conda-forge
python 3.6.7 h8dc6b48_1004 conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python_abi 3.6 2_cp36m conda-forge
pytz 2023.3.post1 pyhd8ed1ab_0 conda-forge
pyyaml 5.4.1 py36hfa26744_1 conda-forge
pyzmq 19.0.2 py36hd529914_2 conda-forge
qt 5.9.7 h93ee506_2 conda-forge
qtconsole 4.4.2 py36_0 conda-forge
r 3.6.0 r36_0
r-assertthat 0.2.1 r36h6115d3f_2 conda-forge
r-base 3.6.0 hcb44179_0
r-base64enc 0.1_3 r36h28b5c78_1004 conda-forge
r-boot 1.3_20 r36h6115d3f_0
r-class 7.3_15 r36h46e59ec_0
r-cli 2.5.0 r36hc72bb7e_0 conda-forge
r-cluster 2.0.8 r36hfffe0aa_0
r-codetools 0.2_16 r36h6115d3f_0
r-crayon 1.4.1 r36hc72bb7e_0 conda-forge
r-digest 0.6.27 r36h9951f98_0 conda-forge
r-ellipsis 0.3.2 r36h28b5c78_0 conda-forge
r-evaluate 0.14 r36h6115d3f_2 conda-forge
r-fansi 0.4.2 r36h28b5c78_0 conda-forge
r-foreign 0.8_71 r36h46e59ec_0
r-glue 1.4.2 r36h066c5db_0 conda-forge
r-htmltools 0.5.1.1 r36h9951f98_0 conda-forge
r-irdisplay 1.0 r36hd8ed1ab_0 conda-forge
r-irkernel 1.2 r36hc72bb7e_0 conda-forge
r-jsonlite 1.7.2 r36h066c5db_0 conda-forge
r-kernsmooth 2.23_15 r36hfffe0aa_4
r-lattice 0.20_38 r36h46e59ec_0
r-lifecycle 1.0.0 r36hc72bb7e_0 conda-forge
r-mass 7.3_51.3 r36h46e59ec_0
r-matrix 1.2_17 r36h46e59ec_0
r-mgcv 1.8_28 r36h46e59ec_0
r-nlme 3.1_139 r36hfffe0aa_0
r-nnet 7.3_12 r36h46e59ec_0
r-pbdzmq 0.3_5 r36h5cc58b7_1 conda-forge
r-pillar 1.6.1 r36hc72bb7e_0 conda-forge
r-recommended 3.6.0 r36_0
r-repr 1.1.3 r36h785f33e_0 conda-forge
r-rlang 0.4.11 r36h28b5c78_0 conda-forge
r-rpart 4.1_15 r36h46e59ec_0
r-spatial 7.3_11 r36h46e59ec_4
r-survival 2.44_1.1 r36h46e59ec_0
r-utf8 1.2.1 r36h28b5c78_0 conda-forge
r-uuid 0.1_4 r36h17f1fa6_1 conda-forge
r-vctrs 0.3.8 r36h28b5c78_1 conda-forge
readline 7.0 hcfe32e1_1001 conda-forge
requests 2.28.1 pyhd8ed1ab_0 conda-forge
samtools 1.4.1 0 bioconda
scipy 1.3.1 py36hab3da7d_2 conda-forge
seaborn 0.11.2 hd8ed1ab_0 conda-forge
seaborn-base 0.11.2 pyhd8ed1ab_0 conda-forge
send2trash 1.8.2 pyhd1c38e8_0 conda-forge
setuptools 49.6.0 py36h79c6626_3 conda-forge
sickle 0.7.0 pyh9f0ad1d_0 bioconda
simplegeneric 0.8.1 py_1 conda-forge
sip 4.19.8 py36h0a44026_0
six 1.16.0 pyh6c4a22f_0 conda-forge
snakemake 3.13.3 py36_0 bioconda
snappy 1.1.10 h225ccf5_0 conda-forge
sqlite 3.28.0 h9721f7c_0 conda-forge
sra-tools 2.8.0 0 bioconda
stack_data 0.6.2 pyhd8ed1ab_0 conda-forge
star 2.5.2b 0 bioconda
statsmodels 0.12.2 py36hf14bfbd_0 conda-forge
stone 3.3.1 pyhd8ed1ab_0 conda-forge
tapi 1000.10.8 ha1b3eb9_0
tbb 2021.10.0 h1c7c39f_1 conda-forge
terminado 0.9.4 py36hecd8cb5_0
testpath 0.6.0 pyhd8ed1ab_0 conda-forge
tk 8.6.13 hef22860_0 conda-forge
tktable 2.10 ha166976_5 conda-forge
tornado 6.1 py36hfa26744_1 conda-forge
traitlets 4.3.3 pyhd8ed1ab_2 conda-forge
urllib3 1.26.8 pyhd8ed1ab_1 conda-forge
variant_tools 3.1.3 py36h7df4a66_2 bioconda
vt 0.57721 hfd6c91b_9 bioconda
wcwidth 0.2.8 pyhd8ed1ab_0 conda-forge
webencodings 0.5.1 pyhd8ed1ab_2 conda-forge
wheel 0.36.2 pyhd3deb0d_0 conda-forge
widgetsnbextension 3.3.1 py36_1 conda-forge
wrapt 1.12.1 py36hfa26744_3 conda-forge
xz 5.4.2 h6c40b1e_0
yaml 0.2.5 h0d85af4_2 conda-forge
zeromq 4.3.4 he49afe7_1 conda-forge
zipp 3.6.0 pyhd3eb1b0_0
zlib 1.2.13 h8a1eda9_5 conda-forge
zstd 1.5.5 h829000d_0 conda-forge
Apparently, vt is installed. However, when I run any vt command, like vt --version or vt decomposeI get the following error:
dyld: Library not loaded: @rpath/libcurl.4.dylib
Referenced from: /Users/julia/miniconda3/envs/bioinformatics-env/bin/vt
Reason: Incompatible library version: vt requires version 13.0.0 or later, but libcurl.4.dylib provides version 11.0.0
Abort trap: 6
I got this error before with other packages, but I could solved it either by updating all the conda packages (conda update --all) or by installing the package indicating the concrete version.
Any idea of how to solve this?
Thank you
Hello!
I have this conda environment with the following packages:
Packages:
Apparently, vt is installed. However, when I run any vt command, like
vt --versionorvt decomposeI get the following error:I got this error before with other packages, but I could solved it either by updating all the conda packages (
conda update --all) or by installing the package indicating the concrete version.Any idea of how to solve this?
Thank you