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@aristoteleo

Aristotle

Foundational software ecosystem for predictive genomics

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  1. PantheonOS PantheonOS Public

    A general, evolvable, and distributed agent framework & harness for data science.

    Python 488 67

  2. dynamo-release dynamo-release Public

    Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

    Python 512 60

  3. spateo-release spateo-release Public

    Spatiotemporal modeling of spatial transcriptomics

    Python 344 45

  4. dynamo-tutorials dynamo-tutorials Public

    Tutorials on using latest dynamo package

    Jupyter Notebook 27 14

  5. spateo-viewer spateo-viewer Public

    Web application demonstrating 3D modeling of spatial transcriptomics

    Python 24 7

  6. tabula tabula Public

    Single cell foundation model with federated tabular learning

    Jupyter Notebook 40 5

Repositories

Showing 10 of 63 repositories
  • PantheonOS Public

    A general, evolvable, and distributed agent framework & harness for data science.

    aristoteleo/PantheonOS's past year of commit activity
    Python 488 BSD-2-Clause 67 17 7 Updated Oct 11, 2026
  • epione Public

    Analysis of epigenetic data in Python

    aristoteleo/epione's past year of commit activity
    Jupyter Notebook 12 GPL-3.0 1 1 1 Updated Oct 10, 2026
  • dynamo-release Public

    Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

    aristoteleo/dynamo-release's past year of commit activity
    Python 512 BSD-3-Clause 60 0 2 Updated Oct 8, 2026
  • dynamo-protocol Public

    the repo to reproduce figures for the Dynamo protocol paper

    aristoteleo/dynamo-protocol's past year of commit activity
    Jupyter Notebook 0 MIT 0 1 0 Updated Oct 6, 2026
  • veckit Public

    Virtual Embryo Challenge (VEC) local scorer: score a submitted .h5ad against the T1/T2/T3 metric panels, offline, against reference files you supply.

    aristoteleo/veckit's past year of commit activity
    Python 15 MIT 7 3 6 Updated Oct 2, 2026
  • qiu_lab_website Public

    The source code for the Qiu lab website (based on ato-neulab)

    aristoteleo/qiu_lab_website's past year of commit activity
    HTML 0 MIT 0 12 0 Updated Oct 1, 2026
  • tabula-reproducibility Public

    The repo that reproduces figures in the tabula paper

    aristoteleo/tabula-reproducibility's past year of commit activity
    Python 0 1 0 0 Updated Aug 10, 2026
  • tabula Public

    Single cell foundation model with federated tabular learning

    aristoteleo/tabula's past year of commit activity
    Jupyter Notebook 40 5 1 0 Updated Aug 10, 2026
  • virtual_cell Public

    the website that will be initially used for the scFM review

    aristoteleo/virtual_cell's past year of commit activity
    0 MIT 0 0 0 Updated Jul 29, 2026
  • dynamo-tutorials Public

    Tutorials on using latest dynamo package

    aristoteleo/dynamo-tutorials's past year of commit activity
    Jupyter Notebook 27 14 3 0 Updated Jul 1, 2026
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