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Support frequency-based variant reporting threshold

Status: Open.

#190 In andersen-lab/ivar;

· DOH-JDJ0303 opened on Feb 26, 2026

Are soft-clipped primer bases included in iVar consensus?

Status: Open.

#189 In andersen-lab/ivar;

· MonaMe1112 opened on Jan 14, 2026

header format of .tsv did not match!

Status: Open.

#178 In andersen-lab/ivar;

· zdk427 opened on Apr 25, 2024

Does ivar trim only from the ends of aligned BAM files?

Status: Open.

#177 In andersen-lab/ivar;

· yl315504 opened on Apr 10, 2024

Parsing GFF_FEATURE

Status: Open.

#174 In andersen-lab/ivar;

· jfouret opened on Mar 13, 2024

Variants returns multiple AA with 1.00 frequency

Status: Open.

#173 In andersen-lab/ivar;

· shoulton-invivyd opened on Jan 31, 2024

REF_AA not consistent with actual AA at the position from reference protein fasta file

Status: Open.

#172 In andersen-lab/ivar;

· Shawn-X-Zhang opened on Jan 16, 2024

Header format error in ivar filtervariants

Status: Open.

#171 In andersen-lab/ivar;

· fshepherd13 opened on Nov 29, 2023

Further speedup in iVar Trim primer finding

enhancementNew feature or requestNew feature or request

Status: Open.

#162 In andersen-lab/ivar;

· niemasd opened on Apr 5, 2023

·  

v1.4.3

Clarification of new ivar consensus -c (minimum insertion frequency) parameter

Status: Open.

#149 In andersen-lab/ivar;

· wm75 opened on Feb 13, 2023

Concurrency for ivar trim?

enhancementNew feature or requestNew feature or request

Status: Open.

#139 In andersen-lab/ivar;

· philiptzou opened on Oct 9, 2022

ivar consensus: call reference at positions with low coverage

enhancementNew feature or requestNew feature or request

Status: Open.

#131 In andersen-lab/ivar;

· alephreish opened on Jun 23, 2022