joshuailevy · May 28, 2026 · May 27, 2026 · May 27, 2026 · May 27, 2026 · May 27, 2026
diff --git a/.github/workflows/python-package-conda.yml b/.github/workflows/python-package-conda.yml
@@ -30,7 +30,7 @@ jobs:
           conda config --add channels bioconda
           conda config --add channels conda-forge          
           conda install --yes --file ci/conda_requirements.txt
-          pip install -e . --no-deps 
+          python -m pip install -e . --no-deps 
 
       - name: Test
         shell: bash -l {0}

diff --git a/ci/conda_requirements.txt b/ci/conda_requirements.txt
@@ -20,4 +20,5 @@ pysam
 biopython
 seaborn
 pyarrow
-covar
+covar
+pip
diff --git a/setup.py b/setup.py
@@ -35,7 +35,8 @@
     },
     install_requires=[
         "click", "numpy", "pandas", "cvxpy", "seaborn", "pysam",
-        "biopython", "sphinx", "sphinx_rtd_theme",
+        "biopython", "sphinx", "sphinx_rtd_theme","pyarrow", "tqdm",
+        "plotly",
         "sphinx-click @ git+https://github.com/dylanpilz/sphinx-click.git"
         ]
 )
-Original file line number
+Diff line change
@@ Expand Up / @@ -20,4 +20,5 @@ pysam @@
     biopython
     seaborn
     pyarrow
-    covar
+    covar
+    pip