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Jim Robinson edited this page Feb 22, 2020 · 2 revisions

Browser state (locus, resolution, normalization)

State string, compact form

This form for state requires knowledge of the file details. It is used internally, and in sharable links.

<chr 1 index>, <chr 2 index>, <resolution index>, <left>, <top>, <pixel size>, <normalization>, <unit (optional)

  • chr index: index of chromosome from dataset chromosome array. For Aidenlab pipeline the first chromosome (index 0) is usually the whole-genome pseudo chromosome.

  • resolution index: Index for resolution (bin size) for the specified unit (BP or FRAG). Currently only base pair ("BP") resolutions are supported

  • left: the left position of the viewport in bins

  • pixel size: Size in pixels of a map cell

  • top: the top position of the viewport in bins

  • normalization: NONE | KR | VC_SQRT | etc

  • unit: reserved for future use, currently ignored

State Json

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