nf-core linting

Workflow runs for nf-core linting

• Add haplotype DMR (differential methylation region) calling

  completed successfully:
  nf-core linting#613:Pull request#204synchronizebyYannVRB
  YannVRB:add-dmr-haplotypes

  Oct 17, 20262m 2s
  More actions for workflow run 613

• Add haplotype DMR (differential methylation region) calling

  completed successfully:
  nf-core linting#612:Pull request#204synchronizebyYannVRB
  YannVRB:add-dmr-haplotypes

  Oct 17, 20261m 44s
  More actions for workflow run 612

• Add haplotype DMR (differential methylation region) calling

  completed successfully:
  nf-core linting#611:Pull request#204synchronizebyYannVRB
  YannVRB:add-dmr-haplotypes

  Oct 17, 20262m 20s
  More actions for workflow run 611

• Add haplotype DMR (differential methylation region) calling

  completed successfully:
  nf-core linting#610:Pull request#204synchronizebyYannVRB
  YannVRB:add-dmr-haplotypes

  Oct 15, 20262m 25s
  More actions for workflow run 610

• Add haplotype DMR (differential methylation region) calling

  completed successfully:
  nf-core linting#609:Pull request#204synchronizebyYannVRB
  YannVRB:add-dmr-haplotypes

  Oct 15, 20262m 12s
  More actions for workflow run 609

• Add haplotype DMR (differential methylation region) calling

  completed successfully:
  nf-core linting#608:Pull request#204synchronizebyYannVRB
  YannVRB:add-dmr-haplotypes

  Oct 15, 20262m 3s
  More actions for workflow run 608

• Add haplotype DMR (differential methylation region) calling

  failed:
  nf-core linting#607:Pull request#204synchronizebyYannVRB
  YannVRB:add-dmr-haplotypes

  Oct 15, 20262m 5s
  More actions for workflow run 607

• Add haplotype DMR (differential methylation region) calling

  failed:
  nf-core linting#606:Pull request#204synchronizebyYannVRB
  YannVRB:add-dmr-haplotypes

  Oct 15, 20262m 20s
  More actions for workflow run 606

• Add haplotype DMR (differential methylation region) calling

  failed:
  nf-core linting#605:Pull request#204synchronizebyYannVRB
  YannVRB:add-dmr-haplotypes

  Oct 15, 20262m 11s
  More actions for workflow run 605

• Severus fix

  completed successfully:
  nf-core linting#604:Pull request#223synchronizebyrobert-a-forsyth
  severus-fix

  Oct 14, 20261m 58s
  More actions for workflow run 604

• Severus fix

  completed successfully:
  nf-core linting#603:Pull request#223openedbyrobert-a-forsyth
  severus-fix

  Oct 14, 20262m 6s
  More actions for workflow run 603

• Add ShatterSeek chromothripsis calling with PCAWG confidence tiers

  failed:
  nf-core linting#602:Pull request#222synchronizebyrobert-a-forsyth
  feat/shatterseek

  Oct 14, 20261m 56s
  More actions for workflow run 602

• Add ShatterSeek chromothripsis calling with PCAWG confidence tiers

  failed:
  nf-core linting#601:Pull request#222openedbyrobert-a-forsyth
  feat/shatterseek

  Oct 14, 20262m 3s
  More actions for workflow run 601

• Add haplotype DMR (differential methylation region) calling

  failed:
  nf-core linting#600:Pull request#204synchronizebyYannVRB
  YannVRB:add-dmr-haplotypes

  Oct 14, 20261m 3s
  More actions for workflow run 600

• Export per-mutation signature probabilities from SigProfilerAssignment

  completed successfully:
  nf-core linting#599:Pull request#221synchronizebyrobert-a-forsyth
  fix/sigprofiler-probabilities-per-mutation

  Oct 13, 20262m 5s
  More actions for workflow run 599

• Export per-mutation signature probabilities from SigProfilerAssignment

  completed successfully:
  nf-core linting#598:Pull request#221openedbyrobert-a-forsyth
  fix/sigprofiler-probabilities-per-mutation

  Oct 13, 20262m 1s
  More actions for workflow run 598

• Fix/sigprofiler probabilities per mutation

  completed successfully:
  nf-core linting#597:Pull request#220openedbyrobert-a-forsyth
  fix/sigprofiler-probabilities-per-mutation

  Oct 13, 20261m 59s
  More actions for workflow run 597

• Pair tumor and normal BAMs regardless of per-BAM kinetics

  completed successfully:
  nf-core linting#596:Pull request#219synchronizebyrobert-a-forsyth
  fix/pairing-keys

  Oct 13, 20262m 7s
  More actions for workflow run 596

• Coral

  completed successfully:
  nf-core linting#595:Pull request#205synchronizebyrobert-a-forsyth
  coral

  Oct 12, 20261m 31s
  More actions for workflow run 595

• Coral

  completed successfully:
  nf-core linting#594:Pull request#205synchronizebyrobert-a-forsyth
  coral

  Oct 12, 20263m 21s
  More actions for workflow run 594

• Carry aligned reads as CRAM, with --aligned_format cram|bam

  completed successfully:
  nf-core linting#593:Pull request#207synchronizebyljwharbers
  experiment/cram-io

  Oct 7, 20263m 19s
  More actions for workflow run 593

• fix: VEPPLUGIN tabix version eval fails with BusyBox grep (REVEL, EVE)

  completed successfully:
  nf-core linting#592:Pull request#218synchronizebylaulambr
  fix/vepplugin-tabix-version-busybox

  Oct 7, 20262m 21s
  More actions for workflow run 592

• Optional whitelist Severus calling (--severus_whitelist), patched Severus 1.7

  completed successfully:
  nf-core linting#591:Pull request#215synchronizebyAmberVerhasselt
  AmberVerhasselt:feat/severus-whitelist

  Oct 7, 20261m 53s
  More actions for workflow run 591

• Add Padfoot annotation and ReConPlot figures for the SV/CNA callers

  completed successfully:
  nf-core linting#590:Pull request#202synchronizebyljwharbers
  Tim-Yu:feat/padfoot-reconplot-on-savana-pr189

  Oct 7, 20261m 59s
  More actions for workflow run 590

• Pair tumor and normal BAMs regardless of per-BAM kinetics

  completed successfully:
  nf-core linting#589:Pull request#219openedbyrobert-a-forsyth
  fix/pairing-keys

  Oct 6, 20261m 47s
  More actions for workflow run 589