Issues

• No version printed when installed with Bioconda and executed with the -version flag

  GATB/bcalm#81 · Filter by author karel-brinda opened on Jun 24, 2024

• When multiple inputs specified, BCALM silently loses data

  GATB/bcalm#80 · Filter by author karel-brinda opened on Jun 24, 2024

• Fails to build from source on ARM MacOS

  GATB/bcalm#78 · Filter by author fgindraud opened on May 21, 2024
  1

• Glue is too strong, because glue files are not deleted.

  GATB/bcalm#68 · Filter by author hetica opened on Apr 16, 2021

• bcalm -version return code 1 to shell

  GATB/bcalm#67 · Filter by author hetica opened on Apr 16, 2021

• Apparently bcalm crashes with very large k's (4096)

  GATB/bcalm#65 · Filter by author rchikhi opened on Sep 15, 2020
  1

• Improve error message for bad fasta input

  enhancement
  GATB/bcalm#64 · Filter by author pashadag opened on Jul 23, 2020
  1

• Memory error with many reference genomes as input

  GATB/bcalm#58 · Filter by author dpellow opened on May 16, 2020
  16

• Error: libc++abi.dylib: terminating with uncaught exception of type std::out_of_range: basic_string

  GATB/bcalm#55 · Filter by author karel-brinda opened on Jan 29, 2020
  5

• Running bcalm raises error: cannot create a union-find data structure, too many elements.

  GATB/bcalm#53 · Filter by author halexand opened on Jan 17, 2020
  6

• H5Dread(): can't read data

  enhancement
  GATB/bcalm#51 · Filter by author rchikhi opened on Dec 11, 2019

• Add example to bi-directed graph description

  enhancement
  GATB/bcalm#43 · Filter by author pashadag opened on Jun 7, 2019
  

• Can I submit a subset of kmers from the reads?

  GATB/bcalm#30 · Filter by author richarddurbin opened on Feb 23, 2018
  2

• statically linked binary segfault

  GATB/bcalm#26 · Filter by author koadman opened on Jul 5, 2017

• as of the june update, some compactions aren't made

  GATB/bcalm#15 · Filter by author rchikhi opened on Oct 20, 2016

• a minor compaction bug

  GATB/bcalm#13 · Filter by author rchikhi opened on Aug 10, 2016
  

• possible optimizations

  GATB/bcalm#1 · Filter by author rchikhi opened on Jan 23, 2016
  1