Report Generation; Improve Reacitivty; Type Safety

.devcontainer/devcontainer.json

@@ -1,6 +1,6 @@
 // For format details, see https://aka.ms/devcontainer.json.
 {
-	"name": "epiworldPythonStreamlit Dev Container",
+	"name": "epicc Dev Container",
 	"remoteUser": "dev",
 	"build": {
 		"dockerfile": "../Containerfile",

.github/workflows/containerfile.yml

@@ -4,15 +4,12 @@ on:
   push:
     branches:
       - main
-    paths:
-      - 'Containerfile'
-      - 'pyproject.toml'
-      - 'uv.lock'
+
   workflow_dispatch:
 
 env:
   REGISTRY: ghcr.io
-  IMAGE_NAME: epiforesite/epiworldpythonstreamlit
+  IMAGE_NAME: epiforesite/epicc
 
 jobs:
   build-and-push:

.github/workflows/copilot.yml

@@ -5,38 +5,43 @@ on:
 
 permissions:
   contents: read
-  packages: read
+
+# TODO: This should, at some point, use the container image built by the other workflows.
+#  Not sure how to do that though.
 
 jobs:
   copilot:
     runs-on: ubuntu-latest
-    container:
-      image: ghcr.io/epiforesite/epiworldpythonstreamlit:latest
-      credentials:
-        username: ${{ github.actor }}
-        password: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
       - name: Checkout repository
         uses: actions/checkout@v4
         with:
           fetch-depth: 0
 
-      - name: Sync dependencies
-        run: uv sync --frozen --group dev --no-install-project
-
-      - name: Install development dependencies and tools
+      - name: Install system dependencies
         run: |
           sudo apt-get update && sudo apt-get install -y \
+            build-essential \
+            pkg-config \
             git \
             vim \
             nano \
             curl \
             wget
 
+      - name: Install uv
+        uses: astral-sh/setup-uv@v5
+
+      - name: Install Python
+        run: uv python install 3.12
+
+      - name: Sync dependencies
+        run: uv sync --frozen --group dev --no-install-project
+
       - name: Verify development environment
         run: |
           echo "Development environment ready for GitHub Copilot"
-          echo "Python version: $(python --version)"
+          echo "Python version: $(uv run python --version)"
           echo "uv version: $(uv --version)"
           uv pip list

.github/workflows/deploy_pages.yml

@@ -0,0 +1,60 @@
+name: Deploy to GitHub Pages
+
+on:
+  push:
+    branches: [main]
+  workflow_dispatch:
+
+permissions:
+  contents: read
+  pages: write
+  id-token: write
+
+concurrency:
+  group: pages
+  cancel-in-progress: false
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+
+      - name: Build container image from Containerfile
+        uses: docker/build-push-action@v6
+        with:
+          context: .
+          file: ./Containerfile
+          push: false
+          load: true
+          tags: epicc:local
+          cache-from: type=gha
+          cache-to: type=gha,mode=max
+
+      - name: Build stlite bundle
+        run: |
+          docker run --rm --user root \
+            -v "$PWD:/workspaces/${{ github.event.repository.name }}" \
+            -w /workspaces/${{ github.event.repository.name }} \
+            epicc:local \
+            sh -c "uv sync --frozen && uv run scripts/build.py --app app.py --out dist"
+
+      - name: Upload Pages artifact
+        uses: actions/upload-pages-artifact@v3
+        with:
+          path: dist
+
+  deploy:
+    needs: build
+    runs-on: ubuntu-latest
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    steps:
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@v4

.github/workflows/on_pr.yml

@@ -6,23 +6,33 @@ on:
 
 permissions:
   contents: read
-  packages: read
 
 jobs:
   test:
     runs-on: ubuntu-latest
-    container:
-      image: ghcr.io/epiforesite/epiworldpythonstreamlit:latest
-      credentials:
-        username: ${{ github.actor }}
-        password: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
       - name: Checkout repository
         uses: actions/checkout@v4
 
-      - name: Install dependencies with uv
-        run: uv sync --frozen
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
 
-      - name: Run tests with pytest
-        run: uv run pytest
+      - name: Build container image from Containerfile
+        uses: docker/build-push-action@v6
+        with:
+          context: .
+          file: ./Containerfile
+          push: false
+          load: true
+          tags: epicc:local
+          cache-from: type=gha
+          cache-to: type=gha,mode=max
+
+      - name: Install dependencies and run tests
+        run: |
+          docker run --rm --user root \
+            -v "$PWD:/workspaces/${{ github.event.repository.name }}" \
+            -w /workspaces/${{ github.event.repository.name }} \
+            epicc:local \
+            sh -c "uv sync --frozen && uv run pytest"

.gitignore

@@ -1,12 +1,13 @@
-*.egg-info/
-__pycache__/
-.pytest_cache/
+.coverage
+.DS_Store
 .mypy_cache/
+.pytest_cache/
 .venv/
 .vscode/
-dist/
-*.py[cod]
-.DS_Store
-*.egg
-.coverage
+__pycache__/
 *.bak
+*.egg
+*.egg-info/
+*.py[cod]
+build/
+dist/

AGENTS.md

@@ -1,4 +1,4 @@
-# AGENTS.md — EpiCON Cost Calculator
+# AGENTS.md — epicc Cost Calculator
 
 This file describes the conventions, roles, and constraints for contributors working in this
 repository. All agents — whether running in GitHub Actions or invoked interactively — should
@@ -8,7 +8,7 @@ read and follow this document before making changes.
 
 ## Project overview
 
-**EpiCON** is a browser-based epidemiological cost calculator built with **Streamlit** and
+**epicc** is a browser-based epidemiological cost calculator built with **Streamlit** and
 distributed as a static **stlite** build for browser execution.
 
 The current app supports two model flows:

README.md

@@ -1,4 +1,4 @@
-# epiworldPythonStreamlit
+# epicc
 
 Streamlit webapp for epiworld.
 

app.py

@@ -1,9 +1,3 @@
-"""Top-level Streamlit entrypoint.
-
-This shim makes the app runnable from the repository root without requiring
-manual PYTHONPATH tweaks.
-"""
-
 import sys
 from pathlib import Path
 

docs/index.md

@@ -1,4 +1,4 @@
-# epiworldPythonStreamlit
+# epicc
 
 ## Launch the App
 

pyproject.toml

@@ -1,5 +1,5 @@
 [project]
-name = "epiworld-python-streamlit"
+name = "epicc"
 version = "0.1.0"
 requires-python = ">=3.12"
 dependencies = [
@@ -19,6 +19,7 @@ dev = [
     "types-pyyaml>=6.0.12.20250915",
     "pandas-stubs>=3.0.0.260204",
     "types-openpyxl>=3.1.0.20240106",
+    "playwright>=1.58.0",
 ]
 
 [tool.pytest.ini_options]
@@ -29,8 +30,8 @@ mypy_path = "src"
 explicit_package_bases = true
 
 [tool.stlite]
-title = "EpiCON Cost Calculator"
+title = "epicc Cost Calculator"
 mount_dirs = ["src"]
 text_suffixes = [".py", ".yaml", ".yml", ".css", ".js", ".html"]
 css_url = "https://cdn.jsdelivr.net/npm/@stlite/browser@0.85.1/build/stlite.css"
-js_url = "https://cdn.jsdelivr.net/npm/@stlite/browser@0.85.1/build/stlite.js"
+js_url = "https://cdn.jsdelivr.net/npm/@stlite/browser@0.85.1/build/stlite.js"

scripts/build.py

@@ -204,12 +204,12 @@ def build_loader_html(
     <meta name="mobile-web-app-capable" content="yes" />
     <meta name="apple-mobile-web-app-capable" content="yes" />
     <meta name="apple-mobile-web-app-status-bar-style" content="default" />
-    <meta name="apple-mobile-web-app-title" content="EpiCON" />
+    <meta name="apple-mobile-web-app-title" content="epicc" />
 
     <meta property="og:type" content="website" />
     <meta property="og:title" content="{title_html}" />
     <meta property="og:description" content="Calculate and analyze epidemiological costs" />
-    <meta property="og:url" content="https://epiForeSITE.github.io/epiworldPythonStreamlit" />
+    <meta property="og:url" content="https://epiForeSITE.github.io/epicc" />
 
     <!-- TODO: Favicon -->
     <!-- <link rel="icon" type="image/png" sizes="32x32" href="/favicon-32x32.png" /> -->