biomongo-tools is a Python-based utility designed to manage the information inside of Biomongo. Built as a modular and extensible tool, it simplifies the process of importing, updating, removing, renaming and restoring metadata records in a serialised way.
Biomongo is a MongoDB database (document-oriented) that was created to facilitate the storage and retrieval of metadata derived from various BioTeam initiatives, such as the QC initiative.
To install biomongo-tools, follow these steps:
- Clone this repository to your local machine:
git clone https://github.com/EGA-archive/ega-biomongo-tools.git
cd ega-biomongo-tools
- Install the required dependencies:
pip install -r requirements.txt
biomongo-tools should be as easy to use as possible. The only thing you need to do is modify the conf.py file taking into account your needs.
Then, the only command you'll need is:
python3 tools.py
For more information see user_manual.