Issues

• differential analysis output

  CostaLab/reg-gen#293 · Filter by author sdjebali opened on Oct 16, 2025

• rgt-TDF AttributeError: 'Statistics' object has no attribute 'tpx_ndef'

  CostaLab/reg-gen#292 · Filter by author SophieEhres opened on Jul 30, 2025

• RGT package on PyPi does not install due to deprecation of numpy.distutils

  CostaLab/reg-gen#291 · Filter by author gitozi opened on Jul 7, 2025
  1

• --motif-dbs parameter in rgtmotifanalysis matching doesn't work

  CostaLab/reg-gen#290 · Filter by author Ludomont opened on May 6, 2025
  2

• P value adjustment for HINT differential analysis

  CostaLab/reg-gen#289 · Filter by author romain-giraud opened on Apr 28, 2025

• rgt-THOR should the exts be 0 for paired end reads?

  CostaLab/reg-gen#288 · Filter by author SchwarzMarek opened on Feb 13, 2025

• metadata-generation-failed

  CostaLab/reg-gen#287 · Filter by author patrycjas02 opened on Jan 13, 2025

• Why do columns "V4" have negative value?

  CostaLab/reg-gen#286 · Filter by author xiasijian opened on Oct 23, 2024

• rgt-hint differential Error

  CostaLab/reg-gen#285 · Filter by author nihenniuwa opened on Oct 8, 2024
  4

• rgt-TDF problem

  CostaLab/reg-gen#284 · Filter by author Charbelfeg opened on Sep 26, 2024
  1

• P-value THOR

  CostaLab/reg-gen#281 · Filter by author sathvik-samaga opened on Aug 30, 2024
  1

• reg-gen for non-model organism

  CostaLab/reg-gen#279 · Filter by author francicco opened on Jul 19, 2024

• unable to generate the index.html file When using TDF

  CostaLab/reg-gen#277 · Filter by author zisweet opened on Jul 17, 2024

• Update to JASPAR 2022

  CostaLab/reg-gen#274 · Filter by author kelly-sovacool opened on Jul 11, 2024

• configparser.NoOptionError: No option 'gene_regions' in section: 'hg38'

  CostaLab/reg-gen#273 · Filter by author zisweet opened on Jul 2, 2024
  2

• warnings/errors in rgt-THOR

  CostaLab/reg-gen#271 · Filter by author sunta3iouxos opened on May 15, 2024

• rgt-THOR multiple warnings for wigToBigWig

  CostaLab/reg-gen#270 · Filter by author sunta3iouxos opened on May 15, 2024

• failed installation on Mac mini with Apple M2 Chip

  CostaLab/reg-gen#269 · Filter by author JianxunHan opened on Mar 28, 2024
  1

• Deprecation warnings, non-compatibility with python 3.12, libpng12.so.0

  CostaLab/reg-gen#268 · Filter by author StrohD opened on Feb 8, 2024
  1

• Error in rgt-hint differential for my own data

  CostaLab/reg-gen#267 · Filter by author junichitaniguchi opened on Feb 8, 2024

• Fold-change values in THOR differential peaks and post-processed bigwigs

  CostaLab/reg-gen#265 · Filter by author dmitrymyl opened on Jan 24, 2024

• Result file description

  CostaLab/reg-gen#264 · Filter by author ilead-cong opened on Dec 4, 2023

• aarch64 support

  CostaLab/reg-gen#262 · Filter by author EricDeveaud opened on Sep 14, 2023

• Transcription factor scatter plot

  CostaLab/reg-gen#261 · Filter by author gf5634 opened on Aug 28, 2023
  2

• ResourceWarning: unclosed file (Enable tracemalloc to get the object allocation traceback)

  CostaLab/reg-gen#259 · Filter by author sunta3iouxos opened on Aug 2, 2023