This is a Shiny app for quantifying the benefit versus cost of whole genome sequencing (WGS) for three foodborne pathogens: Salmonella spp. (nontyphoidal), Listeria monocytogenes, and E. coli (STEC).
R is needed (version 4.5.1 or higher is recommended). The following R packages (available on CRAN) are also needed: shiny, shinyjs, shinyvalidate, rmarkdown, knitr, magrittr, and flextable.
To run this app, place all the files into your R working directory. At the R
prompt, type: shiny::runApp().
The app uses a wizard-style interface to walk the user through the required
steps.
| File | md5sum |
|---|---|
| global.R | c5c5d6b51954a4be40b6584501a728a2 |
| server.R | 7caeb54b3454a0471846c0f3b33aca36 |
| ui.R | ee63a561f6a25bde52e661cb71b4812a |
| wgs-report-word.Rmd | 453b1cc6dba3984ae70313bbaac03c03 |
| common/word-styling.docx | a4411ba6e2b365736c52c7a018aecc0f |
| R/helpers-element-modifications.R | 7065b7aaaab617d787c7843b50969d66 |
| R/helpers-formatting.R | 5676234efad49e961242ff9ff7a1a2b0 |
| R/helpers-table.R | 84d7105b85c49f34d1cf2d886acea334 |
| www/jscript.js | 982e7d560bb0a3ec05469e3e1a90e1f0 |
| www/style.css | 8cb4163e3c97711e230a40a4209cfa20 |
GPL-3
