specify7/.github/workflows/coverage.yml at main · specify/specify7 · GitHub

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name: Coverage

on:
  workflow_dispatch:

jobs:
  setup-and-run:
    if: github.event_name == 'workflow_dispatch'
    runs-on: ubuntu-latest
    permissions:
      contents: read

    steps:
      - name: Install needed packages
        id: apt
        run: |
          sudo apt update
          sudo apt install docker-compose-v2 openssh-client

      - uses: actions/checkout@v4
        with:
          persist-credentials: false

      - name: Fetch coverage script
        id: clone-coverage
        run: |
          eval "$(ssh-agent -s)"
          ssh-add - <<< '${{ secrets.COVERAGE_SCRIPT_CLONE }}'
          cd ~
          git clone git@github.com:specify/specify-development
          sudo install -m 0777 -o "$USER" specify-development/scripts/tests/{run-coverage,test_coverage.py} /usr/bin/
          cd -

      - name: Configure specify
        id: config-specify
        run: |
          { IFS= read -d "" -r env <<-EOS
          DATABASE_HOST=mariadb
          DATABASE_PORT=3306
          MYSQL_ROOT_PASSWORD=password
          DATABASE_NAME=specify

          MASTER_NAME=root
          MASTER_PASSWORD=password
          MASTER_HOST=%

          MIGRATOR_NAME=root
          MIGRATOR_PASSWORD=password
          MIGRATOR_HOST=%

          APP_USER_NAME=root
          APP_USER_PASSWORD=password
          APP_HOST=%

          ALLOW_SUPPORT_LOGIN=false
          SUPPORT_LOGIN_TTL=180

          SECRET_KEY=change_this_to_some_unique_random_string

          ASSET_SERVER_URL=http://host.docker.internal/web_asset_store.xml
          ASSET_SERVER_KEY=your_asset_server_access_key
          REDIS_HOST=redis
          REDIS_PORT=6379
          REDIS_DB_INDEX=0

          REPORT_RUNNER_HOST=report-runner
          REPORT_RUNNER_PORT=8080

          CELERY_BROKER_URL=redis://redis/0
          CELERY_RESULT_BACKEND=redis://redis/1

          TIME_ZONE=America/Chicago

          LOG_LEVEL=WARNING

          SP7_DEBUG=true
          EOS
          } || true

          echo "$env" > .env

          sed -i 's/#[ ]*\(.*requirements-testing.txt\)/\1/; s/\(COPY\) \(requirements-testing.txt\)/\1 --chown=specify:specify \2/' Dockerfile
          sed -i 's/\(\(DATABASE_\|MASTER_\|MIGRATOR\|APP_USER_\)[^O].*\) = \(.*\)/\1 = os.environ.get("\1", "")/' specifyweb/settings/specify_settings.py
          for i in range {0..3}; do
            sudo chmod a+x $(find . -type d)
            sudo chmod -R a+rw .
          done
          docker compose up --build -d

      - name: Fix mariadb
        id: reboot-mariadb
        run: |
          sleep 10
          docker compose up -d mariadb
          sleep 10
          docker exec mariadb mariadb -uroot -ppassword -e"DROP USER root;
              CREATE USER 'root'@'%' IDENTIFIED BY 'password';
              GRANT ALL ON *.* TO 'root'@'%' IDENTIFIED BY 'password';
              DROP DATABASE IF EXISTS specify;"
          docker compose down
          docker compose up -d
          sleep 10


      - name: Run the script
        id: run-coverage
        run: run-coverage -t pj -a pj -d pj -o html,csv


      - name: Upload report as artifact
        uses: actions/upload-artifact@v7
        with:
          name: coverage-report
          path: ./report.tar.bz2
          archive: false
          retention-days: 1