From 1e0ca2e78a9a9f20d8c25567e4995494a0261ad9 Mon Sep 17 00:00:00 2001 From: moonraker595 Date: Fri, 31 Oct 2025 14:09:24 +0000 Subject: [PATCH 01/52] Adding string to supported list --- operationsgateway_api/src/records/ingestion/channel_checks.py | 1 + 1 file changed, 1 insertion(+) diff --git a/operationsgateway_api/src/records/ingestion/channel_checks.py b/operationsgateway_api/src/records/ingestion/channel_checks.py index 0da1442f..252a8f4c 100644 --- a/operationsgateway_api/src/records/ingestion/channel_checks.py +++ b/operationsgateway_api/src/records/ingestion/channel_checks.py @@ -51,6 +51,7 @@ def __init__( "rgb-image", "waveform", "vector", + "string" ] def set_channels(self, manifest) -> None: From e555f716431192fd45b48b32877ca9109a7b1aec Mon Sep 17 00:00:00 2001 From: moonraker595 Date: Fri, 31 Oct 2025 14:10:25 +0000 Subject: [PATCH 02/52] Adding string to model list --- .../src/records/ingestion/hdf_handler.py | 54 +++++++++++++++++++ 1 file changed, 54 insertions(+) diff --git a/operationsgateway_api/src/records/ingestion/hdf_handler.py b/operationsgateway_api/src/records/ingestion/hdf_handler.py index 2c16394c..647451e6 100644 --- a/operationsgateway_api/src/records/ingestion/hdf_handler.py +++ b/operationsgateway_api/src/records/ingestion/hdf_handler.py @@ -27,6 +27,8 @@ WaveformChannelMetadataModel, WaveformChannelModel, WaveformModel, + StringChannelModel, + StringChannelMetadataModel, ) from operationsgateway_api.src.records.float_image import FloatImage from operationsgateway_api.src.records.image import Image @@ -45,6 +47,7 @@ class HDFDataHandler: "float_image": ["data"], "waveform": ["x", "y"], "vector": ["data"], + "string": ["data"], } def __init__(self, hdf_temp_file: SpooledTemporaryFile) -> None: @@ -58,6 +61,7 @@ def __init__(self, hdf_temp_file: SpooledTemporaryFile) -> None: self.images = [] self.float_images = [] self.vectors = [] + self.strings = [] async def extract_data( self, @@ -331,6 +335,48 @@ def _extract_vector( except ValidationError as exc: raise ModelError(str(exc)) from exc + def _extract_string( + self, + internal_failed_channel, + channel_name, + channel_metadata, + value, + ): + """ + Extract data for string in the HDF file and place the data into + relevant Pydantic models as well as performing string specific checks + """ + if self._unexpected_attribute("string", value): + internal_failed_channel.append( + {channel_name: "unexpected group or dataset in channel group"}, + ) + return None, internal_failed_channel + + try: + channel = StringChannelModel( + metadata=StringChannelMetadataModel(**channel_metadata), + data=value["data"][()], + ) + return channel, False + except KeyError: + internal_failed_channel.append( + {channel_name: "data attribute is missing"}, + ) + return None, internal_failed_channel + except ValidationError as exc: + for error in exc.errors(): + if ( + error["type"] == "int_type" + or error["type"] == "float_type" + ): + internal_failed_channel.append( + {channel_name: "data has wrong datatype"}, + ) + break + else: + raise ModelError(str(exc)) from exc + return None, internal_failed_channel + async def _extract_channel( self, channel_name: str, @@ -338,6 +384,7 @@ async def _extract_channel( manifest: ChannelManifestModel, internal_failed_channel: list[dict[str, str]], ) -> list[dict[str, str]]: + fail = None channel_metadata = dict(value.attrs) channel_checks = ChannelChecks( ingested_record={channel_name: channel_metadata}, @@ -389,6 +436,13 @@ async def _extract_channel( channel_metadata, value, ) + elif value.attrs["channel_dtype"] == "string": + channel, fail = self._extract_string( + internal_failed_channel, + channel_name, + channel_metadata, + value, + ) if fail: internal_failed_channel = fail From 2443fcd6b5642ad91ecd30433c74656de722c8c9 Mon Sep 17 00:00:00 2001 From: moonraker595 Date: Fri, 31 Oct 2025 14:16:14 +0000 Subject: [PATCH 03/52] Adding string to shotnum types --- .../src/records/ingestion/record_checks.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/operationsgateway_api/src/records/ingestion/record_checks.py b/operationsgateway_api/src/records/ingestion/record_checks.py index d381a802..87011973 100644 --- a/operationsgateway_api/src/records/ingestion/record_checks.py +++ b/operationsgateway_api/src/records/ingestion/record_checks.py @@ -60,9 +60,9 @@ def optional_metadata_checks(self): and ingested_metadata.shotnum is not None ): shotnum_type = type(ingested_metadata.shotnum) - if shotnum_type != int: + if shotnum_type not in (int, str): log.error( - "Datatype of shotnum is '%s', expected integer", + "Datatype of shotnum is '%s', expected integer or string", shotnum_type, ) - raise RejectRecordError("shotnum has wrong datatype. Expected integer") + raise RejectRecordError("shotnum has wrong datatype. Expected integer or String") From 7f67c992153162065c234d2117611552a144b582 Mon Sep 17 00:00:00 2001 From: moonraker595 Date: Fri, 31 Oct 2025 14:16:30 +0000 Subject: [PATCH 04/52] Adding string to channel dtypes --- operationsgateway_api/src/models.py | 20 ++++++++++++++++++-- 1 file changed, 18 insertions(+), 2 deletions(-) diff --git a/operationsgateway_api/src/models.py b/operationsgateway_api/src/models.py index dedabb03..d639466f 100644 --- a/operationsgateway_api/src/models.py +++ b/operationsgateway_api/src/models.py @@ -53,6 +53,7 @@ class ChannelDtype(StrEnum): WAVEFORM = "waveform" VECTOR = "vector" SCALAR = "scalar" + STRING = "string" class ImageModel(BaseModel): @@ -194,9 +195,18 @@ class VectorChannelModel(BaseModel): vector_path: str | Any | None = None +class StringChannelMetadataModel(BaseModel): + channel_dtype: Literal[ChannelDtype.STRING] | Any | None = ChannelDtype.STRING + + +class StringChannelModel(BaseModel): + metadata: StringChannelMetadataModel + data: Optional[str] + + class RecordMetadataModel(BaseModel): epac_ops_data_version: Optional[Any] = None - shotnum: Optional[int] = None + shotnum: Optional[str] = None timestamp: Optional[Any] = None active_area: Optional[Any] = None active_experiment: Optional[Any] = None @@ -211,7 +221,8 @@ class RecordModel(BaseModel): | FloatImageChannelModel | ScalarChannelModel | WaveformChannelModel - | VectorChannelModel, + | VectorChannelModel + | StringChannelModel, ] @@ -243,6 +254,10 @@ class PartialVectorChannelModel(VectorChannelModel): thumbnail: bytes | None = None vector_path: str | None = None +class PartialStringChannelModel(StringChannelModel): + metadata: StringChannelMetadataModel | None = None + data: str | None = None + PartialChannelModel = ( PartialImageChannelModel @@ -250,6 +265,7 @@ class PartialVectorChannelModel(VectorChannelModel): | PartialScalarChannelModel | PartialWaveformChannelModel | PartialVectorChannelModel + | PartialStringChannelModel ) PartialChannels = dict[str, PartialChannelModel] From f0ffa6f292e66c2c4243e229053bc843076ccff5 Mon Sep 17 00:00:00 2001 From: moonraker595 Date: Fri, 31 Oct 2025 14:57:00 +0000 Subject: [PATCH 05/52] Adding optional unit field for strings --- operationsgateway_api/src/models.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/operationsgateway_api/src/models.py b/operationsgateway_api/src/models.py index d639466f..e606b7d6 100644 --- a/operationsgateway_api/src/models.py +++ b/operationsgateway_api/src/models.py @@ -197,7 +197,7 @@ class VectorChannelModel(BaseModel): class StringChannelMetadataModel(BaseModel): channel_dtype: Literal[ChannelDtype.STRING] | Any | None = ChannelDtype.STRING - + units: Optional[Union[str, Any]] = None class StringChannelModel(BaseModel): metadata: StringChannelMetadataModel From 33de6443e1c94cda0fb0f618efb076a97ea7e39b Mon Sep 17 00:00:00 2001 From: moonraker595 Date: Fri, 31 Oct 2025 14:57:42 +0000 Subject: [PATCH 06/52] Adding standard string channel checks --- .../src/records/ingestion/channel_checks.py | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/operationsgateway_api/src/records/ingestion/channel_checks.py b/operationsgateway_api/src/records/ingestion/channel_checks.py index 252a8f4c..5c297e88 100644 --- a/operationsgateway_api/src/records/ingestion/channel_checks.py +++ b/operationsgateway_api/src/records/ingestion/channel_checks.py @@ -16,6 +16,7 @@ VectorModel, WaveformChannelMetadataModel, WaveformModel, + StringChannelMetadataModel, ) @@ -371,6 +372,23 @@ def scalar_metadata_checks( return rejected_channels + @classmethod + def string_metadata_checks( + cls, + key: str, + value_dict: dict | StringChannelMetadataModel, + rejected_channels: list[dict[str, str]], + ) -> list[dict[str, str]]: + """ + Various checks brought out of the main function to simplify it + + when called it returns a list of rejected_channels (if any) from the checks ran + """ + value_dict = ChannelChecks._ensure_dict(value_dict) + ChannelChecks._check_str(key, "units", value_dict, rejected_channels) + + return rejected_channels + @classmethod def image_metadata_checks( cls, @@ -473,6 +491,13 @@ def optional_dtype_checks(self): rejected_channels, ) + if value.metadata.channel_dtype == "string": + rejected_channels = self.string_metadata_checks( + key, + value.metadata, + rejected_channels, + ) + elif value.metadata.channel_dtype == "image": rejected_channels = self.image_metadata_checks( key, From 7b7ccd51efdd1919f8889ad2e8faec62ceeee434 Mon Sep 17 00:00:00 2001 From: moonraker595 Date: Tue, 4 Nov 2025 15:45:56 +0000 Subject: [PATCH 07/52] reverting shotnum to int --- operationsgateway_api/src/models.py | 2 +- .../src/records/ingestion/record_checks.py | 6 +++--- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/operationsgateway_api/src/models.py b/operationsgateway_api/src/models.py index e606b7d6..79b562a6 100644 --- a/operationsgateway_api/src/models.py +++ b/operationsgateway_api/src/models.py @@ -206,7 +206,7 @@ class StringChannelModel(BaseModel): class RecordMetadataModel(BaseModel): epac_ops_data_version: Optional[Any] = None - shotnum: Optional[str] = None + shotnum: Optional[int] = None timestamp: Optional[Any] = None active_area: Optional[Any] = None active_experiment: Optional[Any] = None diff --git a/operationsgateway_api/src/records/ingestion/record_checks.py b/operationsgateway_api/src/records/ingestion/record_checks.py index 87011973..d381a802 100644 --- a/operationsgateway_api/src/records/ingestion/record_checks.py +++ b/operationsgateway_api/src/records/ingestion/record_checks.py @@ -60,9 +60,9 @@ def optional_metadata_checks(self): and ingested_metadata.shotnum is not None ): shotnum_type = type(ingested_metadata.shotnum) - if shotnum_type not in (int, str): + if shotnum_type != int: log.error( - "Datatype of shotnum is '%s', expected integer or string", + "Datatype of shotnum is '%s', expected integer", shotnum_type, ) - raise RejectRecordError("shotnum has wrong datatype. Expected integer or String") + raise RejectRecordError("shotnum has wrong datatype. Expected integer") From 4b040f5153c45dddefbaeb71bfbd1375e5df6e62 Mon Sep 17 00:00:00 2001 From: moonraker595 Date: Mon, 10 Nov 2025 15:02:16 +0000 Subject: [PATCH 08/52] making shotnum string --- operationsgateway_api/src/models.py | 2 +- .../src/records/ingestion/record_checks.py | 6 +++--- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/operationsgateway_api/src/models.py b/operationsgateway_api/src/models.py index 79b562a6..e606b7d6 100644 --- a/operationsgateway_api/src/models.py +++ b/operationsgateway_api/src/models.py @@ -206,7 +206,7 @@ class StringChannelModel(BaseModel): class RecordMetadataModel(BaseModel): epac_ops_data_version: Optional[Any] = None - shotnum: Optional[int] = None + shotnum: Optional[str] = None timestamp: Optional[Any] = None active_area: Optional[Any] = None active_experiment: Optional[Any] = None diff --git a/operationsgateway_api/src/records/ingestion/record_checks.py b/operationsgateway_api/src/records/ingestion/record_checks.py index d381a802..87011973 100644 --- a/operationsgateway_api/src/records/ingestion/record_checks.py +++ b/operationsgateway_api/src/records/ingestion/record_checks.py @@ -60,9 +60,9 @@ def optional_metadata_checks(self): and ingested_metadata.shotnum is not None ): shotnum_type = type(ingested_metadata.shotnum) - if shotnum_type != int: + if shotnum_type not in (int, str): log.error( - "Datatype of shotnum is '%s', expected integer", + "Datatype of shotnum is '%s', expected integer or string", shotnum_type, ) - raise RejectRecordError("shotnum has wrong datatype. Expected integer") + raise RejectRecordError("shotnum has wrong datatype. Expected integer or String") From 765b12afb762fb61f6ec6ebdc4e37ce79cd6bb03 Mon Sep 17 00:00:00 2001 From: moonraker595 Date: Tue, 11 Nov 2025 16:14:32 +0000 Subject: [PATCH 09/52] seperated timestamp formats --- operationsgateway_api/src/channels/channel_manifest.py | 4 ++-- operationsgateway_api/src/constants.py | 9 ++++++++- operationsgateway_api/src/routes/sessions.py | 6 +++--- 3 files changed, 13 insertions(+), 6 deletions(-) diff --git a/operationsgateway_api/src/channels/channel_manifest.py b/operationsgateway_api/src/channels/channel_manifest.py index 33bde90a..be6642f5 100644 --- a/operationsgateway_api/src/channels/channel_manifest.py +++ b/operationsgateway_api/src/channels/channel_manifest.py @@ -7,7 +7,7 @@ import pymongo from operationsgateway_api.src.channels.manifest_validator import ManifestValidator -from operationsgateway_api.src.constants import ID_DATETIME_FORMAT +from operationsgateway_api.src.constants import MANIFEST_DATETIME_FORMAT from operationsgateway_api.src.exceptions import ChannelManifestError, ModelError from operationsgateway_api.src.models import ChannelManifestModel, ChannelModel from operationsgateway_api.src.mongo.interface import MongoDBInterface @@ -62,7 +62,7 @@ def _add_id(self) -> str: used elsewhere in the code """ - return datetime.now().strftime(ID_DATETIME_FORMAT) + return datetime.now().strftime(MANIFEST_DATETIME_FORMAT) @staticmethod def _use_model(data: dict) -> ChannelManifestModel: diff --git a/operationsgateway_api/src/constants.py b/operationsgateway_api/src/constants.py index 908b799d..2414754e 100644 --- a/operationsgateway_api/src/constants.py +++ b/operationsgateway_api/src/constants.py @@ -4,6 +4,13 @@ # "path" and "method" values, for example: # , '/images/{record_id}/{channel_name} GET' ROUTE_MAPPINGS = {} + ID_DATETIME_FORMAT = "%Y%m%d%H%M%S" -DATA_DATETIME_FORMAT = "%Y-%m-%dT%H:%M:%S%z" +DATA_DATETIME_FORMATS = [ + "%Y-%m-%dT%H:%M:%S.%f%z", # with fractional seconds (1–6 digits) + "%Y-%m-%dT%H:%M:%S%z", # without fractional seconds +] +MANIFEST_DATETIME_FORMAT = "%Y%m%d%H%M%S" +SESSION_DATETIME_FORMAT = "%Y-%m-%dT%H:%M:%S%z" + LOG_CONFIG_LOCATION = str(Path(__file__).parent.parent / "logging.ini") diff --git a/operationsgateway_api/src/routes/sessions.py b/operationsgateway_api/src/routes/sessions.py index c26be5f4..73d86429 100644 --- a/operationsgateway_api/src/routes/sessions.py +++ b/operationsgateway_api/src/routes/sessions.py @@ -12,7 +12,7 @@ from operationsgateway_api.src.auth.authorisation import authorise_token from operationsgateway_api.src.auth.jwt_handler import JwtHandler -from operationsgateway_api.src.constants import DATA_DATETIME_FORMAT +from operationsgateway_api.src.constants import SESSION_DATETIME_FORMAT from operationsgateway_api.src.error_handling import endpoint_error_handling from operationsgateway_api.src.exceptions import ModelError from operationsgateway_api.src.models import UserSessionModel @@ -151,7 +151,7 @@ async def save_user_session( name=name, summary=summary, auto_saved=auto_saved, - timestamp=datetime.strftime(datetime.now(), DATA_DATETIME_FORMAT), + timestamp=datetime.strftime(datetime.now(), SESSION_DATETIME_FORMAT), session=data, ) @@ -215,7 +215,7 @@ async def update_user_session( name=name, summary=summary, auto_saved=auto_saved, - timestamp=datetime.strftime(datetime.now(), DATA_DATETIME_FORMAT), + timestamp=datetime.strftime(datetime.now(), SESSION_DATETIME_FORMAT), session=data, ) except ValidationError as exc: From 2e41c4fb17f8a5c5656f7686e9bf7e35069597ae Mon Sep 17 00:00:00 2001 From: moonraker595 Date: Tue, 11 Nov 2025 16:15:35 +0000 Subject: [PATCH 10/52] added millisecond accuracy to hdf checker and file path --- .../src/records/ingestion/hdf_handler.py | 50 ++++++++++++++----- 1 file changed, 38 insertions(+), 12 deletions(-) diff --git a/operationsgateway_api/src/records/ingestion/hdf_handler.py b/operationsgateway_api/src/records/ingestion/hdf_handler.py index 647451e6..88bf36d1 100644 --- a/operationsgateway_api/src/records/ingestion/hdf_handler.py +++ b/operationsgateway_api/src/records/ingestion/hdf_handler.py @@ -7,7 +7,7 @@ from pydantic import ValidationError from operationsgateway_api.src.channels.channel_manifest import ChannelManifest -from operationsgateway_api.src.constants import DATA_DATETIME_FORMAT, ID_DATETIME_FORMAT +from operationsgateway_api.src.constants import ID_DATETIME_FORMAT, DATA_DATETIME_FORMATS from operationsgateway_api.src.exceptions import HDFDataExtractionError, ModelError from operationsgateway_api.src.models import ( ChannelManifestModel, @@ -81,18 +81,16 @@ async def extract_data( log.debug("Extracting data from HDF files") metadata_hdf = dict(self.hdf_file.attrs) - try: - metadata_hdf["timestamp"] = datetime.strptime( - metadata_hdf["timestamp"], - DATA_DATETIME_FORMAT, - ) - except (KeyError, ValueError, TypeError) as exc: - raise HDFDataExtractionError( - "Invalid timestamp metadata. Expected key 'timestamp' with value " - "formatted, for example as: '2025-04-07T14:28:16+00:00'.", - ) from exc - self.record_id = metadata_hdf["timestamp"].strftime(ID_DATETIME_FORMAT) + # takes a timestamp string from the HDF metadata, normalises it, + # and returns a proper timezone-aware datetime object, or raises an + # error if the format is wrong. + metadata_hdf["timestamp"] = self._parse_data_timestamp(metadata_hdf["timestamp"]) + + # Converts the parsed datetime object into a compact record ID string + # that includes milliseconds. + self.record_id = self._create_record_id(metadata_hdf["timestamp"]) + await self.extract_channels() try: @@ -113,6 +111,34 @@ async def extract_data( self.internal_failed_channel, ) + def _parse_data_timestamp(self,timestamp): + # Optional: normalise 'Z' to '+00:00' + if timestamp.endswith("Z"): + timestamp = timestamp[:-1] + "+00:00" + last_exc = None + for fmt in DATA_DATETIME_FORMATS: + try: + return datetime.strptime(timestamp, fmt) + except (ValueError, TypeError) as exc: + last_exc = exc + raise HDFDataExtractionError( + "Invalid timestamp metadata. Expected 'timestamp' like " + "'2025-04-07T14:28:16.123+00:00' or without milliseconds." + ) from last_exc + + def _create_record_id(self, timestamp: datetime) -> str: + """ + Create a compact record ID string based on a datetime, + including milliseconds for precision. + Example: 2025-10-30 22:45:07.106000 becomes "20251030224507106" + """ + # Format up to seconds + record_id_base = timestamp.strftime(ID_DATETIME_FORMAT) + # Convert microseconds to milliseconds + milliseconds = int(timestamp.microsecond / 1000) + # Combine and pad milliseconds to 3 digits + return f"{record_id_base}{milliseconds:03d}" + def _unexpected_attribute(self, channel_type, value): """ tells the location it is called whether to stop. Stops if the value for data From e21e67ef9f55fb199411180f8e5bc402249f2e75 Mon Sep 17 00:00:00 2001 From: moonraker595 Date: Wed, 18 Mar 2026 13:56:04 +0000 Subject: [PATCH 11/52] Now using shot type for filtering and changes models to accept and return strings --- operationsgateway_api/src/models.py | 43 ++++++++++++++++----- operationsgateway_api/src/records/record.py | 6 ++- 2 files changed, 37 insertions(+), 12 deletions(-) diff --git a/operationsgateway_api/src/models.py b/operationsgateway_api/src/models.py index e606b7d6..765ec691 100644 --- a/operationsgateway_api/src/models.py +++ b/operationsgateway_api/src/models.py @@ -379,37 +379,60 @@ class ExperimentPartMappingModel(BaseModel): class ShotnumConverterRange(BaseModel): opposite_range_fields: ClassVar[Dict[str, str]] = {"from": "min_", "to": "max_"} - min_: Union[int, datetime] = Field(alias="min") - max_: Union[int, datetime] = Field(alias="max") + type: Literal["GA", "GS", "GQ", "GD"] + min_: str = Field(alias="min") + max_: str = Field(alias="max") + + @field_validator("min_", "max_") + def validate_shotnum_matches_type( + cls, # noqa: N805 + value, + values, + ) -> str: + range_type = values.data.get("type") + + if range_type is None: + return value + + if range_type == "GD": + if len(value) != 15: + raise ModelError( + "GD shot numbers must be in the format yyyymmdd-hhmmss" + ) + else: + if not value.startswith(range_type): + raise ModelError( + f"Shot number '{value}' does not match type '{range_type}'" + ) + return value @field_validator("max_") def validate_min_max( cls, # noqa: N805 value, values, - ) -> Union[int, datetime]: + ) -> str: if value < values.data["min_"]: raise ModelError("max cannot be less than min value") - else: - return value + return value class DateConverterRange(BaseModel): opposite_range_fields: ClassVar[Dict[str, str]] = {"min": "from_", "max": "to"} - from_: Union[int, datetime] = Field(alias="from") - to: Union[int, datetime] + type: Literal["GA", "GS", "GQ", "GD"] + from_: datetime = Field(alias="from") + to: datetime @field_validator("to") def validate_min_max( cls, # noqa: N805 value, values, - ) -> Union[int, datetime]: + ) -> datetime: if value < values.data["from_"]: raise ModelError("to cannot be less than from value") - else: - return value + return value class UserSessionModel(BaseModel): diff --git a/operationsgateway_api/src/records/record.py b/operationsgateway_api/src/records/record.py index e796e989..633c3273 100644 --- a/operationsgateway_api/src/records/record.py +++ b/operationsgateway_api/src/records/record.py @@ -473,6 +473,7 @@ async def convert_search_ranges(date_range, shotnum_range): range_input = DateConverterRange(**date_range) except ValidationError as exc: raise ModelError(str(exc)) from exc + elif shotnum_range: # Convert shot number range to date range comparison_field_name = "metadata.shotnum" @@ -491,6 +492,7 @@ async def convert_search_ranges(date_range, shotnum_range): { "$match": { "$and": [ + {"metadata.active_area": range_input.type}, { comparison_field_name: { "$gte": getattr( @@ -524,9 +526,9 @@ async def convert_search_ranges(date_range, shotnum_range): try: if shotnum_range: - return DateConverterRange(**converted_range[0]) + return DateConverterRange(type=range_input.type, **converted_range[0]) else: - return ShotnumConverterRange(**converted_range[0]) + return ShotnumConverterRange(type=range_input.type, **converted_range[0]) except ValidationError as exc: raise ModelError(str(exc)) from exc From aac1bbf883e7d271190947c12b9794ffd2f19a37 Mon Sep 17 00:00:00 2001 From: moonraker595 Date: Mon, 13 Apr 2026 12:26:01 +0000 Subject: [PATCH 12/52] fixinf tests for datetime list --- poetry.lock | 7 ++++++- test/sessions/test_user_session.py | 6 +++--- test/sessions/test_user_session_list.py | 4 ++-- 3 files changed, 11 insertions(+), 6 deletions(-) diff --git a/poetry.lock b/poetry.lock index a5ee1255..f693dce9 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 2.1.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.2.1 and should not be changed by hand. 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+6,7 @@ import pytest from operationsgateway_api.src.auth.jwt_handler import JwtHandler -from operationsgateway_api.src.constants import DATA_DATETIME_FORMAT +from operationsgateway_api.src.constants import DATA_DATETIME_FORMATS from operationsgateway_api.src.exceptions import ( DatabaseError, DuplicateSessionError, @@ -29,7 +29,7 @@ class TestUserSession: "username": "Test User", "name": "Test Session", "summary": "Test Summary", - "timestamp": datetime.strftime(datetime.now(), DATA_DATETIME_FORMAT), + "timestamp": datetime.strftime(datetime.now(), DATA_DATETIME_FORMATS[1]), "auto_saved": False, "session": {"sessionData": [1, 2, 3]}, } @@ -46,7 +46,7 @@ async def test_valid_get(self): "username": "Test User", "name": "Test Session", "summary": "Test Summary", - "timestamp": datetime.strftime(datetime.now(), DATA_DATETIME_FORMAT), + "timestamp": datetime.strftime(datetime.now(), DATA_DATETIME_FORMATS[1]), "auto_saved": False, "session": {"sessionData": [1, 2, 3]}, } diff --git a/test/sessions/test_user_session_list.py b/test/sessions/test_user_session_list.py index e2d2344a..0d573c79 100644 --- a/test/sessions/test_user_session_list.py +++ b/test/sessions/test_user_session_list.py @@ -3,7 +3,7 @@ import pytest -from operationsgateway_api.src.constants import DATA_DATETIME_FORMAT +from operationsgateway_api.src.constants import DATA_DATETIME_FORMATS from operationsgateway_api.src.models import UserSessionListModel from operationsgateway_api.src.sessions.user_session_list import UserSessionList @@ -25,7 +25,7 @@ async def test_get_session_list(self, _): "summary": "Test Summary", "timestamp": datetime.strftime( datetime.now(), - DATA_DATETIME_FORMAT, + DATA_DATETIME_FORMATS[1], ), "auto_saved": False, "session": {"mySessionData": [1, 2, 3]}, From 0fe77b667fc13f504385b30635423f5389f3e680 Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Tue, 14 Apr 2026 12:56:44 +0000 Subject: [PATCH 13/52] updating ci config to use short timestamps --- .github/ci_config.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/ci_config.yml b/.github/ci_config.yml index 812fa07d..45543679 100644 --- a/.github/ci_config.yml +++ b/.github/ci_config.yml @@ -6,6 +6,7 @@ app: url_prefix: "" maintenance_file: operationsgateway_api/maintenance.json.example scheduled_maintenance_file: operationsgateway_api/scheduled_maintenance.json.example + use_sub_second_timestamps: false images: thumbnail_size: [50, 50] default_colour_map: viridis From 2a268bf605dda29eb8ffd59b0c21f9ebfaa687a9 Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Tue, 14 Apr 2026 12:57:29 +0000 Subject: [PATCH 14/52] Added config handler for new congig item to set timestamps (or record ids) to short or long --- operationsgateway_api/src/config.py | 1 + operationsgateway_api/src/models.py | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/operationsgateway_api/src/config.py b/operationsgateway_api/src/config.py index 4f240067..998b1774 100644 --- a/operationsgateway_api/src/config.py +++ b/operationsgateway_api/src/config.py @@ -28,6 +28,7 @@ class App(BaseModel): url_prefix: StrictStr maintenance_file: FilePath scheduled_maintenance_file: FilePath + use_sub_second_timestamps: StrictBool = False class ImagesConfig(BaseModel): diff --git a/operationsgateway_api/src/models.py b/operationsgateway_api/src/models.py index e606b7d6..6c58dbfe 100644 --- a/operationsgateway_api/src/models.py +++ b/operationsgateway_api/src/models.py @@ -206,7 +206,7 @@ class StringChannelModel(BaseModel): class RecordMetadataModel(BaseModel): epac_ops_data_version: Optional[Any] = None - shotnum: Optional[str] = None + shotnum: int | str | None = None timestamp: Optional[Any] = None active_area: Optional[Any] = None active_experiment: Optional[Any] = None From 476c814fc414236256a63e4dfa153d4b0b483560 Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Tue, 14 Apr 2026 12:58:11 +0000 Subject: [PATCH 15/52] Now checking and parsing timestamps --- .../src/records/ingestion/hdf_handler.py | 38 +++++++++++++++---- 1 file changed, 31 insertions(+), 7 deletions(-) diff --git a/operationsgateway_api/src/records/ingestion/hdf_handler.py b/operationsgateway_api/src/records/ingestion/hdf_handler.py index 88bf36d1..63fdc354 100644 --- a/operationsgateway_api/src/records/ingestion/hdf_handler.py +++ b/operationsgateway_api/src/records/ingestion/hdf_handler.py @@ -2,6 +2,7 @@ import logging from tempfile import SpooledTemporaryFile from typing import Any, Literal +from operationsgateway_api.src.config import Config import h5py from pydantic import ValidationError @@ -85,7 +86,9 @@ async def extract_data( # takes a timestamp string from the HDF metadata, normalises it, # and returns a proper timezone-aware datetime object, or raises an # error if the format is wrong. - metadata_hdf["timestamp"] = self._parse_data_timestamp(metadata_hdf["timestamp"]) + metadata_hdf["timestamp"] = self._parse_data_timestamp( + metadata_hdf.get("timestamp") + ) # Converts the parsed datetime object into a compact record ID string # that includes milliseconds. @@ -111,16 +114,32 @@ async def extract_data( self.internal_failed_channel, ) - def _parse_data_timestamp(self,timestamp): - # Optional: normalise 'Z' to '+00:00' + def _parse_data_timestamp(self, timestamp): + if timestamp in (None, ""): + raise HDFDataExtractionError( + "Invalid timestamp metadata. Expected 'timestamp' like " + "'2025-04-07T14:28:16.123+00:00' or without milliseconds." + ) + + if isinstance(timestamp, bytes): + timestamp = timestamp.decode() + + if not isinstance(timestamp, str): + raise HDFDataExtractionError( + "Invalid timestamp metadata. Expected 'timestamp' like " + "'2025-04-07T14:28:16.123+00:00' or without milliseconds." + ) + if timestamp.endswith("Z"): timestamp = timestamp[:-1] + "+00:00" + last_exc = None for fmt in DATA_DATETIME_FORMATS: try: return datetime.strptime(timestamp, fmt) except (ValueError, TypeError) as exc: last_exc = exc + raise HDFDataExtractionError( "Invalid timestamp metadata. Expected 'timestamp' like " "'2025-04-07T14:28:16.123+00:00' or without milliseconds." @@ -134,10 +153,15 @@ def _create_record_id(self, timestamp: datetime) -> str: """ # Format up to seconds record_id_base = timestamp.strftime(ID_DATETIME_FORMAT) - # Convert microseconds to milliseconds - milliseconds = int(timestamp.microsecond / 1000) - # Combine and pad milliseconds to 3 digits - return f"{record_id_base}{milliseconds:03d}" + + if Config.config.app.use_sub_second_timestamps: + # Convert microseconds to milliseconds + milliseconds = int(timestamp.microsecond / 1000) + # Combine and pad milliseconds to 3 digits + return f"{record_id_base}{milliseconds:03d}" + + return record_id_base + def _unexpected_attribute(self, channel_type, value): """ From ac28b352c6e7d413cb3e49603c3733b85f11944e Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Tue, 14 Apr 2026 12:58:20 +0000 Subject: [PATCH 16/52] Updated error message --- operationsgateway_api/src/records/ingestion/record_checks.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/operationsgateway_api/src/records/ingestion/record_checks.py b/operationsgateway_api/src/records/ingestion/record_checks.py index 87011973..9373e5c2 100644 --- a/operationsgateway_api/src/records/ingestion/record_checks.py +++ b/operationsgateway_api/src/records/ingestion/record_checks.py @@ -65,4 +65,4 @@ def optional_metadata_checks(self): "Datatype of shotnum is '%s', expected integer or string", shotnum_type, ) - raise RejectRecordError("shotnum has wrong datatype. Expected integer or String") + raise RejectRecordError("shotnum has wrong datatype. Expected integer or string") From bca290157310ea4b25b10d69892adaa47fefacf4 Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Tue, 14 Apr 2026 12:58:54 +0000 Subject: [PATCH 17/52] Updated tests to account for new shotnum type of string --- test/records/ingestion/test_record_checks.py | 16 ---------------- test/sessions/test_user_session.py | 6 +++--- test/sessions/test_user_session_list.py | 4 ++-- 3 files changed, 5 insertions(+), 21 deletions(-) diff --git a/test/records/ingestion/test_record_checks.py b/test/records/ingestion/test_record_checks.py index 1d96317e..41c2d036 100644 --- a/test/records/ingestion/test_record_checks.py +++ b/test/records/ingestion/test_record_checks.py @@ -64,22 +64,6 @@ async def test_record_checks_pass( "active_area has wrong datatype. Expected string", id="active_area wrong datatype", ), - pytest.param( - ["ea1", "exists"], - ["invalid", "exists"], - [90097341, "exists"], - "other", - "empty", - id="shotnum and active_experiment have wrong datatype", - ), - pytest.param( - ["ea1", "exists"], - ["invalid", "exists"], - ["90097341", "missing"], - "other", - "empty", - id="shotnum has wrong datatype active_experiment missing", - ), pytest.param( ["ea1", "exists"], ["valid", "missing"], diff --git a/test/sessions/test_user_session.py b/test/sessions/test_user_session.py index 39442d7a..872c024e 100644 --- a/test/sessions/test_user_session.py +++ b/test/sessions/test_user_session.py @@ -6,7 +6,7 @@ import pytest from operationsgateway_api.src.auth.jwt_handler import JwtHandler -from operationsgateway_api.src.constants import DATA_DATETIME_FORMAT +from operationsgateway_api.src.constants import DATA_DATETIME_FORMATS from operationsgateway_api.src.exceptions import ( DatabaseError, DuplicateSessionError, @@ -29,7 +29,7 @@ class TestUserSession: "username": "Test User", "name": "Test Session", "summary": "Test Summary", - "timestamp": datetime.strftime(datetime.now(), DATA_DATETIME_FORMAT), + "timestamp": datetime.strftime(datetime.now(), DATA_DATETIME_FORMATS[1]), "auto_saved": False, "session": {"sessionData": [1, 2, 3]}, } @@ -46,7 +46,7 @@ async def test_valid_get(self): "username": "Test User", "name": "Test Session", "summary": "Test Summary", - "timestamp": datetime.strftime(datetime.now(), DATA_DATETIME_FORMAT), + "timestamp": datetime.strftime(datetime.now(), DATA_DATETIME_FORMATS[1]), "auto_saved": False, "session": {"sessionData": [1, 2, 3]}, } diff --git a/test/sessions/test_user_session_list.py b/test/sessions/test_user_session_list.py index e2d2344a..0d573c79 100644 --- a/test/sessions/test_user_session_list.py +++ b/test/sessions/test_user_session_list.py @@ -3,7 +3,7 @@ import pytest -from operationsgateway_api.src.constants import DATA_DATETIME_FORMAT +from operationsgateway_api.src.constants import DATA_DATETIME_FORMATS from operationsgateway_api.src.models import UserSessionListModel from operationsgateway_api.src.sessions.user_session_list import UserSessionList @@ -25,7 +25,7 @@ async def test_get_session_list(self, _): "summary": "Test Summary", "timestamp": datetime.strftime( datetime.now(), - DATA_DATETIME_FORMAT, + DATA_DATETIME_FORMATS[1], ), "auto_saved": False, "session": {"mySessionData": [1, 2, 3]}, From fad12f69332952a5505c44647856e35209912dfc Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Tue, 14 Apr 2026 13:47:46 +0000 Subject: [PATCH 18/52] Linting --- operationsgateway_api/src/constants.py | 2 +- operationsgateway_api/src/models.py | 2 ++ .../src/records/ingestion/channel_checks.py | 12 ++++----- .../src/records/ingestion/hdf_handler.py | 25 +++++++++---------- .../src/records/ingestion/record_checks.py | 4 ++- 5 files changed, 24 insertions(+), 21 deletions(-) diff --git a/operationsgateway_api/src/constants.py b/operationsgateway_api/src/constants.py index 2414754e..eab76bda 100644 --- a/operationsgateway_api/src/constants.py +++ b/operationsgateway_api/src/constants.py @@ -8,7 +8,7 @@ ID_DATETIME_FORMAT = "%Y%m%d%H%M%S" DATA_DATETIME_FORMATS = [ "%Y-%m-%dT%H:%M:%S.%f%z", # with fractional seconds (1–6 digits) - "%Y-%m-%dT%H:%M:%S%z", # without fractional seconds + "%Y-%m-%dT%H:%M:%S%z", # without fractional seconds ] MANIFEST_DATETIME_FORMAT = "%Y%m%d%H%M%S" SESSION_DATETIME_FORMAT = "%Y-%m-%dT%H:%M:%S%z" diff --git a/operationsgateway_api/src/models.py b/operationsgateway_api/src/models.py index 6c58dbfe..586f679a 100644 --- a/operationsgateway_api/src/models.py +++ b/operationsgateway_api/src/models.py @@ -199,6 +199,7 @@ class StringChannelMetadataModel(BaseModel): channel_dtype: Literal[ChannelDtype.STRING] | Any | None = ChannelDtype.STRING units: Optional[Union[str, Any]] = None + class StringChannelModel(BaseModel): metadata: StringChannelMetadataModel data: Optional[str] @@ -254,6 +255,7 @@ class PartialVectorChannelModel(VectorChannelModel): thumbnail: bytes | None = None vector_path: str | None = None + class PartialStringChannelModel(StringChannelModel): metadata: StringChannelMetadataModel | None = None data: str | None = None diff --git a/operationsgateway_api/src/records/ingestion/channel_checks.py b/operationsgateway_api/src/records/ingestion/channel_checks.py index 5c297e88..04b7ea84 100644 --- a/operationsgateway_api/src/records/ingestion/channel_checks.py +++ b/operationsgateway_api/src/records/ingestion/channel_checks.py @@ -12,11 +12,11 @@ ImageChannelMetadataModel, ImageModel, ScalarChannelMetadataModel, + StringChannelMetadataModel, VectorChannelMetadataModel, VectorModel, WaveformChannelMetadataModel, WaveformModel, - StringChannelMetadataModel, ) @@ -52,7 +52,7 @@ def __init__( "rgb-image", "waveform", "vector", - "string" + "string", ] def set_channels(self, manifest) -> None: @@ -374,10 +374,10 @@ def scalar_metadata_checks( @classmethod def string_metadata_checks( - cls, - key: str, - value_dict: dict | StringChannelMetadataModel, - rejected_channels: list[dict[str, str]], + cls, + key: str, + value_dict: dict | StringChannelMetadataModel, + rejected_channels: list[dict[str, str]], ) -> list[dict[str, str]]: """ Various checks brought out of the main function to simplify it diff --git a/operationsgateway_api/src/records/ingestion/hdf_handler.py b/operationsgateway_api/src/records/ingestion/hdf_handler.py index 63fdc354..93806cfb 100644 --- a/operationsgateway_api/src/records/ingestion/hdf_handler.py +++ b/operationsgateway_api/src/records/ingestion/hdf_handler.py @@ -2,13 +2,16 @@ import logging from tempfile import SpooledTemporaryFile from typing import Any, Literal -from operationsgateway_api.src.config import Config import h5py from pydantic import ValidationError from operationsgateway_api.src.channels.channel_manifest import ChannelManifest -from operationsgateway_api.src.constants import ID_DATETIME_FORMAT, DATA_DATETIME_FORMATS +from operationsgateway_api.src.config import Config +from operationsgateway_api.src.constants import ( + DATA_DATETIME_FORMATS, + ID_DATETIME_FORMAT, +) from operationsgateway_api.src.exceptions import HDFDataExtractionError, ModelError from operationsgateway_api.src.models import ( ChannelManifestModel, @@ -22,14 +25,14 @@ RecordModel, ScalarChannelMetadataModel, ScalarChannelModel, + StringChannelMetadataModel, + StringChannelModel, VectorChannelMetadataModel, VectorChannelModel, VectorModel, WaveformChannelMetadataModel, WaveformChannelModel, WaveformModel, - StringChannelModel, - StringChannelMetadataModel, ) from operationsgateway_api.src.records.float_image import FloatImage from operationsgateway_api.src.records.image import Image @@ -87,7 +90,7 @@ async def extract_data( # and returns a proper timezone-aware datetime object, or raises an # error if the format is wrong. metadata_hdf["timestamp"] = self._parse_data_timestamp( - metadata_hdf.get("timestamp") + metadata_hdf.get("timestamp"), ) # Converts the parsed datetime object into a compact record ID string @@ -118,7 +121,7 @@ def _parse_data_timestamp(self, timestamp): if timestamp in (None, ""): raise HDFDataExtractionError( "Invalid timestamp metadata. Expected 'timestamp' like " - "'2025-04-07T14:28:16.123+00:00' or without milliseconds." + "'2025-04-07T14:28:16.123+00:00' or without milliseconds.", ) if isinstance(timestamp, bytes): @@ -127,7 +130,7 @@ def _parse_data_timestamp(self, timestamp): if not isinstance(timestamp, str): raise HDFDataExtractionError( "Invalid timestamp metadata. Expected 'timestamp' like " - "'2025-04-07T14:28:16.123+00:00' or without milliseconds." + "'2025-04-07T14:28:16.123+00:00' or without milliseconds.", ) if timestamp.endswith("Z"): @@ -142,7 +145,7 @@ def _parse_data_timestamp(self, timestamp): raise HDFDataExtractionError( "Invalid timestamp metadata. Expected 'timestamp' like " - "'2025-04-07T14:28:16.123+00:00' or without milliseconds." + "'2025-04-07T14:28:16.123+00:00' or without milliseconds.", ) from last_exc def _create_record_id(self, timestamp: datetime) -> str: @@ -162,7 +165,6 @@ def _create_record_id(self, timestamp: datetime) -> str: return record_id_base - def _unexpected_attribute(self, channel_type, value): """ tells the location it is called whether to stop. Stops if the value for data @@ -415,10 +417,7 @@ def _extract_string( return None, internal_failed_channel except ValidationError as exc: for error in exc.errors(): - if ( - error["type"] == "int_type" - or error["type"] == "float_type" - ): + if error["type"] == "int_type" or error["type"] == "float_type": internal_failed_channel.append( {channel_name: "data has wrong datatype"}, ) diff --git a/operationsgateway_api/src/records/ingestion/record_checks.py b/operationsgateway_api/src/records/ingestion/record_checks.py index 9373e5c2..a0331620 100644 --- a/operationsgateway_api/src/records/ingestion/record_checks.py +++ b/operationsgateway_api/src/records/ingestion/record_checks.py @@ -65,4 +65,6 @@ def optional_metadata_checks(self): "Datatype of shotnum is '%s', expected integer or string", shotnum_type, ) - raise RejectRecordError("shotnum has wrong datatype. Expected integer or string") + raise RejectRecordError( + "shotnum has wrong datatype. Expected integer or string", + ) From 36fb18687f14d2b51c7972ee2a4f23fde20d0ca6 Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Tue, 14 Apr 2026 14:47:53 +0000 Subject: [PATCH 19/52] bumping poetry version --- .github/ci_requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/ci_requirements.txt b/.github/ci_requirements.txt index 7a3a1a78..ca9b717f 100644 --- a/.github/ci_requirements.txt +++ b/.github/ci_requirements.txt @@ -1,2 +1,2 @@ -poetry==2.1.1 +poetry==2.3.3 nox==2025.2.9 From f9764225328320a0bd704c902f82f447106e9bf3 Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Tue, 14 Apr 2026 14:55:11 +0000 Subject: [PATCH 20/52] bumping versions --- poetry.lock | 769 +++++++++++++++++++++++++++---------------------- pyproject.toml | 15 +- 2 files changed, 439 insertions(+), 345 deletions(-) diff --git a/poetry.lock b/poetry.lock index f693dce9..74998010 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 2.2.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.1.1 and should not be changed by hand. 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"sha256:a7871bfd1cbff431a1fc91ba60ae154510c80f575e6b9a2bbb13dfb4650afd22"}, - {file = "flake8_black-0.2.4-py3-none-any.whl", hash = "sha256:0a70dfd97c8439827f365dc6dbc6c8c9cc087f0833625c6cc6848ff7876256be"}, + {file = "flake8_black-0.4.0-py3-none-any.whl", hash = "sha256:288762d0c9ea065782d87eeecbcc20c69079d17fe1d0f0445f0eb0b0ffb80c39"}, + {file = "flake8_black-0.4.0.tar.gz", hash = "sha256:bf226868f695dee48d55ff6d7747e900709bfd6f605b7a378c70e711e3fc26cb"}, ] [package.dependencies] -black = "*" -flake8 = ">=3.0.0" -toml = "*" +black = ">=22.1.0" +flake8 = ">=3" + +[package.extras] +develop = ["build", "twine"] [[package]] name = "flake8-broken-line" @@ -3751,6 +3754,24 @@ pytest = ">=4.6" [package.extras] testing = ["fields", "hunter", "process-tests", "pytest-xdist", "six", "virtualenv"] +[[package]] +name = "pytest-mock" +version = "3.15.1" +description = "Thin-wrapper around the mock package for easier use with pytest" +optional = false +python-versions = ">=3.9" +groups = ["dev"] +files = [ + {file = "pytest_mock-3.15.1-py3-none-any.whl", hash = "sha256:0a25e2eb88fe5168d535041d09a4529a188176ae608a6d249ee65abc0949630d"}, + {file = "pytest_mock-3.15.1.tar.gz", hash = "sha256:1849a238f6f396da19762269de72cb1814ab44416fa73a8686deac10b0d87a0f"}, +] + +[package.dependencies] +pytest = ">=6.2.5" + +[package.extras] +dev = ["pre-commit", "pytest-asyncio", "tox"] + [[package]] name = "python-dateutil" version = "2.8.2" @@ -4138,25 +4159,26 @@ files = [ [[package]] name = "requests" -version = "2.32.4" +version = "2.33.0" description = "Python HTTP for Humans." optional = false -python-versions = ">=3.8" +python-versions = ">=3.10" groups = ["main", "dev"] files = [ - {file = "requests-2.32.4-py3-none-any.whl", hash = "sha256:27babd3cda2a6d50b30443204ee89830707d396671944c998b5975b031ac2b2c"}, - {file = "requests-2.32.4.tar.gz", hash = "sha256:27d0316682c8a29834d3264820024b62a36942083d52caf2f14c0591336d3422"}, + {file = "requests-2.33.0-py3-none-any.whl", hash = "sha256:3324635456fa185245e24865e810cecec7b4caf933d7eb133dcde67d48cee69b"}, + {file = "requests-2.33.0.tar.gz", hash = "sha256:c7ebc5e8b0f21837386ad0e1c8fe8b829fa5f544d8df3b2253bff14ef29d7652"}, ] [package.dependencies] -certifi = ">=2017.4.17" +certifi = ">=2023.5.7" charset_normalizer = ">=2,<4" idna = ">=2.5,<4" -urllib3 = ">=1.21.1,<3" +urllib3 = ">=1.26,<3" [package.extras] socks = ["PySocks (>=1.5.6,!=1.5.7)"] -use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"] +test = ["PySocks (>=1.5.6,!=1.5.7)", "pytest (>=3)", "pytest-cov", "pytest-httpbin (==2.1.0)", "pytest-mock", "pytest-xdist"] +use-chardet-on-py3 = ["chardet (>=3.0.2,<8)"] [[package]] name = "requests-file" @@ -4432,18 +4454,6 @@ files = [ doc = ["reno", "sphinx"] test = ["pytest", "tornado (>=4.5)", "typeguard"] -[[package]] -name = "toml" -version = "0.10.2" -description = "Python Library for Tom's Obvious, Minimal Language" -optional = false -python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" -groups = ["dev"] -files = [ - {file = "toml-0.10.2-py2.py3-none-any.whl", hash = "sha256:806143ae5bfb6a3c6e736a764057db0e6a0e05e338b5630894a5f779cabb4f9b"}, - {file = "toml-0.10.2.tar.gz", hash = "sha256:b3bda1d108d5dd99f4a20d24d9c348e91c4db7ab1b749200bded2f839ccbe68f"}, -] - [[package]] name = "tomlkit" version = "0.14.0" @@ -4883,4 +4893,4 @@ xmlsec = ["xmlsec (>=0.6.1)"] [metadata] lock-version = "2.1" python-versions = ">=3.11,<3.12" -content-hash = "3da047f4d7e9f18c751775103b342339f33412ef7e98a585f803e3882a30f619" +content-hash = "b6003c3c61b0b2d1fef62dc9356822033788bb8249fc1b3cac14b4558d00c4ad" From ccfd00086a45d351f6123ad3c9c3943cb7307775 Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Tue, 14 Apr 2026 15:15:44 +0000 Subject: [PATCH 25/52] regenerating lock file --- poetry.lock | 27 ++++++++++++++------------- pyproject.toml | 3 ++- 2 files changed, 16 insertions(+), 14 deletions(-) diff --git a/poetry.lock b/poetry.lock index 4f52051c..33d47a65 100644 --- a/poetry.lock +++ b/poetry.lock @@ -3697,24 +3697,25 @@ diagrams = ["jinja2", "railroad-diagrams"] [[package]] name = "pytest" -version = "7.4.4" +version = "9.0.3" description = "pytest: simple powerful testing with Python" optional = false -python-versions = ">=3.7" +python-versions = ">=3.10" groups = ["dev"] files = [ - {file = "pytest-7.4.4-py3-none-any.whl", hash = "sha256:b090cdf5ed60bf4c45261be03239c2c1c22df034fbffe691abe93cd80cea01d8"}, - {file = "pytest-7.4.4.tar.gz", hash = "sha256:2cf0005922c6ace4a3e2ec8b4080eb0d9753fdc93107415332f50ce9e7994280"}, + {file = "pytest-9.0.3-py3-none-any.whl", hash = "sha256:2c5efc453d45394fdd706ade797c0a81091eccd1d6e4bccfcd476e2b8e0ab5d9"}, + {file = "pytest-9.0.3.tar.gz", hash = "sha256:b86ada508af81d19edeb213c681b1d48246c1a91d304c6c81a427674c17eb91c"}, ] [package.dependencies] -colorama = {version = "*", markers = "sys_platform == \"win32\""} -iniconfig = "*" -packaging = "*" -pluggy = ">=0.12,<2.0" +colorama = {version = ">=0.4", markers = "sys_platform == \"win32\""} +iniconfig = ">=1.0.1" +packaging = ">=22" +pluggy = ">=1.5,<2" +pygments = ">=2.7.2" [package.extras] -testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "setuptools", "xmlschema"] +dev = ["argcomplete", "attrs (>=19.2)", "hypothesis (>=3.56)", "mock", "requests", "setuptools", "xmlschema"] [[package]] name = "pytest-asyncio" @@ -4421,14 +4422,14 @@ files = [ [[package]] name = "starlette" -version = "0.48.0" +version = "0.49.3" description = "The little ASGI library that shines." optional = false python-versions = ">=3.9" groups = ["main"] files = [ - {file = "starlette-0.48.0-py3-none-any.whl", hash = "sha256:0764ca97b097582558ecb498132ed0c7d942f233f365b86ba37770e026510659"}, - {file = "starlette-0.48.0.tar.gz", hash = "sha256:7e8cee469a8ab2352911528110ce9088fdc6a37d9876926e73da7ce4aa4c7a46"}, + {file = "starlette-0.49.3-py3-none-any.whl", hash = "sha256:b579b99715fdc2980cf88c8ec96d3bf1ce16f5a8051a7c2b84ef9b1cdecaea2f"}, + {file = "starlette-0.49.3.tar.gz", hash = "sha256:1c14546f299b5901a1ea0e34410575bc33bbd741377a10484a54445588d00284"}, ] [package.dependencies] @@ -4893,4 +4894,4 @@ xmlsec = ["xmlsec (>=0.6.1)"] [metadata] lock-version = "2.1" python-versions = ">=3.11,<3.12" -content-hash = "b6003c3c61b0b2d1fef62dc9356822033788bb8249fc1b3cac14b4558d00c4ad" +content-hash = "60835e04208039e643180f15e63e0a144674a60307b0176b5197e7f4030f1560" diff --git a/pyproject.toml b/pyproject.toml index bc794886..4dba277e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -49,6 +49,7 @@ cachetools = "^6.2.0" Authlib = "^1.6.10" urllib3 = "^2.6.3" aiohttp = "^3.13.5" +starlette = "^0.49.1" [tool.poetry.group.dev.dependencies] black = "^26.3.1" @@ -63,7 +64,7 @@ flake8-import-order = "^0.18.1" flake8-logging-format = "^0.6.0" pep8-naming = "^0.12.1" safety = "^3.5.2" -pytest = "^7.2.0" +pytest = "^9.0.3" requests = "2.33.0" pytest-cov = "^3.0.0" coverage = "^6.4.4" From d7d396c5c929a04e6d424aecae78f7719ad91355 Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Tue, 14 Apr 2026 15:21:32 +0000 Subject: [PATCH 26/52] regenerating lock file --- poetry.lock | 91 ++++++++++++++++++++++++++++---------------------- pyproject.toml | 6 ++-- 2 files changed, 54 insertions(+), 43 deletions(-) diff --git a/poetry.lock b/poetry.lock index 33d47a65..d5cf0f35 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1243,20 +1243,20 @@ files = [ [[package]] name = "flake8" -version = "4.0.1" +version = "5.0.4" description = "the modular source code checker: pep8 pyflakes and co" optional = false -python-versions = ">=3.6" +python-versions = ">=3.6.1" groups = ["dev"] files = [ - {file = "flake8-4.0.1-py2.py3-none-any.whl", hash = "sha256:479b1304f72536a55948cb40a32dce8bb0ffe3501e26eaf292c7e60eb5e0428d"}, - {file = "flake8-4.0.1.tar.gz", hash = "sha256:806e034dda44114815e23c16ef92f95c91e4c71100ff52813adf7132a6ad870d"}, + {file = "flake8-5.0.4-py2.py3-none-any.whl", hash = "sha256:7a1cf6b73744f5806ab95e526f6f0d8c01c66d7bbe349562d22dfca20610b248"}, + {file = "flake8-5.0.4.tar.gz", hash = "sha256:6fbe320aad8d6b95cec8b8e47bc933004678dc63095be98528b7bdd2a9f510db"}, ] [package.dependencies] -mccabe = ">=0.6.0,<0.7.0" -pycodestyle = ">=2.8.0,<2.9.0" -pyflakes = ">=2.4.0,<2.5.0" +mccabe = ">=0.7.0,<0.8.0" +pycodestyle = ">=2.9.0,<2.10.0" +pyflakes = ">=2.5.0,<2.6.0" [[package]] name = "flake8-black" @@ -1277,21 +1277,6 @@ flake8 = ">=3" [package.extras] develop = ["build", "twine"] -[[package]] -name = "flake8-broken-line" -version = "0.4.0" -description = "Flake8 plugin to forbid backslashes for line breaks" -optional = false -python-versions = ">=3.6,<4.0" -groups = ["dev"] -files = [ - {file = "flake8-broken-line-0.4.0.tar.gz", hash = "sha256:771aab5aa0997666796fed249d0e48e6c01cdfeca8c95521eea28a38b7ced4c7"}, - {file = "flake8_broken_line-0.4.0-py3-none-any.whl", hash = "sha256:e9c522856862239a2c7ef2c1de0276fa598572aa864bd4e9c7efc2a827538515"}, -] - -[package.dependencies] -flake8 = ">=3.5,<5" - [[package]] name = "flake8-bugbear" version = "22.12.6" @@ -1331,18 +1316,18 @@ test = ["coverage", "coveralls", "mock", "pytest", "pytest-cov"] [[package]] name = "flake8-commas" -version = "2.1.0" +version = "4.0.0" description = "Flake8 lint for trailing commas." optional = false -python-versions = "*" +python-versions = ">=3.8" groups = ["dev"] files = [ - {file = "flake8-commas-2.1.0.tar.gz", hash = "sha256:940441ab8ee544df564ae3b3f49f20462d75d5c7cac2463e0b27436e2050f263"}, - {file = "flake8_commas-2.1.0-py2.py3-none-any.whl", hash = "sha256:ebb96c31e01d0ef1d0685a21f3f0e2f8153a0381430e748bf0bbbb5d5b453d54"}, + {file = "flake8_commas-4.0.0-py3-none-any.whl", hash = "sha256:cad476d71ba72e8b941a8508d5b9ffb6b03e50f7102982474f085ad0d674b685"}, + {file = "flake8_commas-4.0.0.tar.gz", hash = "sha256:a68834b42a9a31c94ca790efe557a932c0eae21a3479c6b9a23c4dc077e3ea96"}, ] [package.dependencies] -flake8 = ">=2" +flake8 = ">=5" [[package]] name = "flake8-comprehensions" @@ -2395,14 +2380,14 @@ dev = ["meson-python (>=0.13.1,<0.17.0)", "pybind11 (>=2.13.2,!=2.13.3)", "setup [[package]] name = "mccabe" -version = "0.6.1" +version = "0.7.0" description = "McCabe checker, plugin for flake8" optional = false -python-versions = "*" +python-versions = ">=3.6" groups = ["dev"] files = [ - {file = "mccabe-0.6.1-py2.py3-none-any.whl", hash = "sha256:ab8a6258860da4b6677da4bd2fe5dc2c659cff31b3ee4f7f5d64e79735b80d42"}, - {file = "mccabe-0.6.1.tar.gz", hash = "sha256:dd8d182285a0fe56bace7f45b5e7d1a6ebcbf524e8f3bd87eb0f125271b8831f"}, + {file = "mccabe-0.7.0-py2.py3-none-any.whl", hash = "sha256:6c2d30ab6be0e4a46919781807b4f0d834ebdd6c6e3dca0bda5a15f863427b6e"}, + {file = "mccabe-0.7.0.tar.gz", hash = "sha256:348e0240c33b60bbdf4e523192ef919f28cb2c3d7d5c7794f74009290f236325"}, ] [[package]] @@ -3302,14 +3287,14 @@ pyasn1 = ">=0.6.1,<0.7.0" [[package]] name = "pycodestyle" -version = "2.8.0" +version = "2.9.1" description = "Python style guide checker" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = ">=3.6" groups = ["dev"] files = [ - {file = "pycodestyle-2.8.0-py2.py3-none-any.whl", hash = "sha256:720f8b39dde8b293825e7ff02c475f3077124006db4f440dcbc9a20b76548a20"}, - {file = "pycodestyle-2.8.0.tar.gz", hash = "sha256:eddd5847ef438ea1c7870ca7eb78a9d47ce0cdb4851a5523949f2601d0cbbe7f"}, + {file = "pycodestyle-2.9.1-py2.py3-none-any.whl", hash = "sha256:d1735fc58b418fd7c5f658d28d943854f8a849b01a5d0a1e6f3f3fdd0166804b"}, + {file = "pycodestyle-2.9.1.tar.gz", hash = "sha256:2c9607871d58c76354b697b42f5d57e1ada7d261c261efac224b664affdc5785"}, ] [[package]] @@ -3482,14 +3467,14 @@ typing-extensions = ">=4.14.1" [[package]] name = "pyflakes" -version = "2.4.0" +version = "2.5.0" description = "passive checker of Python programs" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=3.6" groups = ["dev"] files = [ - {file = "pyflakes-2.4.0-py2.py3-none-any.whl", hash = "sha256:3bb3a3f256f4b7968c9c788781e4ff07dce46bdf12339dcda61053375426ee2e"}, - {file = "pyflakes-2.4.0.tar.gz", hash = "sha256:05a85c2872edf37a4ed30b0cce2f6093e1d0581f8c19d7393122da7e25b2b24c"}, + {file = "pyflakes-2.5.0-py2.py3-none-any.whl", hash = "sha256:4579f67d887f804e67edb544428f264b7b24f435b263c4614f384135cea553d2"}, + {file = "pyflakes-2.5.0.tar.gz", hash = "sha256:491feb020dca48ccc562a8c0cbe8df07ee13078df59813b83959cbdada312ea3"}, ] [[package]] @@ -4720,6 +4705,32 @@ files = [ {file = "wrapt-1.17.3.tar.gz", hash = "sha256:f66eb08feaa410fe4eebd17f2a2c8e2e46d3476e9f8c783daa8e09e0faa666d0"}, ] +[[package]] +name = "xrootd" +version = "5.8.2" +description = "eXtended ROOT daemon" +optional = false +python-versions = "*" +groups = ["main"] +files = [ + {file = "xrootd-5.8.2.tar.gz", hash = "sha256:4edac8c49f5e6094b585d88338e5a3a673e7f086806369095ab3b524bb433dcf"}, +] + +[[package]] +name = "xrootd-utils" +version = "0.1.0" +description = "A collection of high-level utility scripts for moving data to and from offline archival storage using XRootD." +optional = false +python-versions = "<3.14,>=3.11" +groups = ["main"] +files = [ + {file = "xrootd_utils-0.1.0-py3-none-any.whl", hash = "sha256:e158535ec01b728f0b28d3129fcc637615726ea92234e7b597f45da10c2d0316"}, + {file = "xrootd_utils-0.1.0.tar.gz", hash = "sha256:20de936f91bd41e3f4d87caf99b7ed5a2c21db3297c323fa70cd55054d12f1d7"}, +] + +[package.dependencies] +xrootd = "5.8.2" + [[package]] name = "yarl" version = "1.23.0" @@ -4894,4 +4905,4 @@ xmlsec = ["xmlsec (>=0.6.1)"] [metadata] lock-version = "2.1" python-versions = ">=3.11,<3.12" -content-hash = "60835e04208039e643180f15e63e0a144674a60307b0176b5197e7f4030f1560" +content-hash = "b2680cf879254acb024c5270889133856695c191d297e875510aa791067de943" diff --git a/pyproject.toml b/pyproject.toml index 4dba277e..bbd7c3f6 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -46,6 +46,7 @@ aiobotocore = ">=2.16.0, <2.17.0" mypy-boto3-s3 = "^1.40.0" async-lru = "^2.0.5" cachetools = "^6.2.0" +xrootd-utils = "^0.1.0" Authlib = "^1.6.10" urllib3 = "^2.6.3" aiohttp = "^3.13.5" @@ -53,12 +54,11 @@ starlette = "^0.49.1" [tool.poetry.group.dev.dependencies] black = "^26.3.1" -flake8 = "^4.0.1" +flake8 = "^5.0.4" flake8-black = "^0.4.0" -flake8-broken-line = "0.4.0" flake8-bugbear = "^22.4.25" flake8-builtins = "^1.5.3" -flake8-commas = "^2.1.0" +flake8-commas = "^4.0.0" flake8-comprehensions = "^3.3.0" flake8-import-order = "^0.18.1" flake8-logging-format = "^0.6.0" From e9d9efa6a8a24e17155a727fb8aed520f671e0e0 Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Tue, 14 Apr 2026 15:50:18 +0000 Subject: [PATCH 27/52] regenerating lock file --- poetry.lock | 4908 ------------------------------------------------ pyproject.toml | 3 +- 2 files changed, 1 insertion(+), 4910 deletions(-) delete mode 100644 poetry.lock diff --git a/poetry.lock b/poetry.lock deleted file mode 100644 index d5cf0f35..00000000 --- a/poetry.lock 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"ffa2b5a7566d2672865c35e6dcf08543c4e658e9c61792a6182b0f298fefdafa" From 33655186cd9d4142b66b49ed811436a26eaedc7d Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Wed, 15 Apr 2026 09:02:05 +0000 Subject: [PATCH 29/52] linting --- operationsgateway_api/src/models.py | 10 +++++----- operationsgateway_api/src/records/record.py | 5 ++++- 2 files changed, 9 insertions(+), 6 deletions(-) diff --git a/operationsgateway_api/src/models.py b/operationsgateway_api/src/models.py index 4627010b..787163d0 100644 --- a/operationsgateway_api/src/models.py +++ b/operationsgateway_api/src/models.py @@ -387,7 +387,7 @@ class ExperimentPartMappingModel(BaseModel): class ShotnumConverterRange(BaseModel): opposite_range_fields: ClassVar[Dict[str, str]] = {"from": "min_", "to": "max_"} - type: Literal["GA", "GS", "GQ", "GD"] + type_: Literal["GA", "GS", "GQ", "GD"] = Field(alias="type") min_: str = Field(alias="min") max_: str = Field(alias="max") @@ -397,7 +397,7 @@ def validate_shotnum_matches_type( value, values, ) -> str: - range_type = values.data.get("type") + range_type = values.data.get("type_") if range_type is None: return value @@ -405,12 +405,12 @@ def validate_shotnum_matches_type( if range_type == "GD": if len(value) != 15: raise ModelError( - "GD shot numbers must be in the format yyyymmdd-hhmmss" + "GD shot numbers must be in the format yyyymmdd-hhmmss", ) else: if not value.startswith(range_type): raise ModelError( - f"Shot number '{value}' does not match type '{range_type}'" + f"Shot number '{value}' does not match type '{range_type}'", ) return value @@ -428,7 +428,7 @@ def validate_min_max( class DateConverterRange(BaseModel): opposite_range_fields: ClassVar[Dict[str, str]] = {"min": "from_", "max": "to"} - type: Literal["GA", "GS", "GQ", "GD"] + type_: Literal["GA", "GS", "GQ", "GD"] = Field(alias="type") from_: datetime = Field(alias="from") to: datetime diff --git a/operationsgateway_api/src/records/record.py b/operationsgateway_api/src/records/record.py index 51bce8bf..f7694b9b 100644 --- a/operationsgateway_api/src/records/record.py +++ b/operationsgateway_api/src/records/record.py @@ -527,7 +527,10 @@ async def convert_search_ranges(date_range, shotnum_range): if shotnum_range: return DateConverterRange(type=range_input.type, **converted_range[0]) else: - return ShotnumConverterRange(type=range_input.type, **converted_range[0]) + return ShotnumConverterRange( + type=range_input.type, + **converted_range[0], + ) except ValidationError as exc: raise ModelError(str(exc)) from exc From f53c106796f8287240cd1f351ed285140a06f5ed Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Wed, 15 Apr 2026 12:36:52 +0000 Subject: [PATCH 30/52] Make shotnum type optional and enforce int/string validation based on presence of type --- operationsgateway_api/src/models.py | 67 +++++++++------ operationsgateway_api/src/records/record.py | 52 +++++++----- test/endpoints/test_range_converter.py | 91 +++++++++++++++++++++ 3 files changed, 163 insertions(+), 47 deletions(-) diff --git a/operationsgateway_api/src/models.py b/operationsgateway_api/src/models.py index 787163d0..60d8b8e6 100644 --- a/operationsgateway_api/src/models.py +++ b/operationsgateway_api/src/models.py @@ -387,48 +387,63 @@ class ExperimentPartMappingModel(BaseModel): class ShotnumConverterRange(BaseModel): opposite_range_fields: ClassVar[Dict[str, str]] = {"from": "min_", "to": "max_"} - type_: Literal["GA", "GS", "GQ", "GD"] = Field(alias="type") - min_: str = Field(alias="min") - max_: str = Field(alias="max") + type_: Literal["GA", "GS", "GQ", "GD"] | None = Field( + default=None, + alias="type", + exclude=True, + ) + min_: int | str = Field(alias="min") + max_: int | str = Field(alias="max") + + @model_validator(mode="after") + def validate_range(self): + # int mode + if self.type_ is None: + if not isinstance(self.min_, int) or not isinstance(self.max_, int): + raise ModelError( + "When type is not provided, min and max must both be integers", + ) - @field_validator("min_", "max_") - def validate_shotnum_matches_type( - cls, # noqa: N805 - value, - values, - ) -> str: - range_type = values.data.get("type_") + if self.max_ < self.min_: + raise ModelError("max cannot be less than min value") - if range_type is None: - return value + return self - if range_type == "GD": - if len(value) != 15: + # typed string mode + if not isinstance(self.min_, str) or not isinstance(self.max_, str): + raise ModelError( + "When type is provided, min and max must both be strings", + ) + + if self.type_ == "GD": + if len(self.min_) != 15 or len(self.max_) != 15: raise ModelError( "GD shot numbers must be in the format yyyymmdd-hhmmss", ) else: - if not value.startswith(range_type): + if not self.min_.startswith(self.type_): raise ModelError( - f"Shot number '{value}' does not match type '{range_type}'", + f"Shot number '{self.min_}' does not match type '{self.type_}'", + ) + if not self.max_.startswith(self.type_): + raise ModelError( + f"Shot number '{self.max_}' does not match type '{self.type_}'", ) - return value - @field_validator("max_") - def validate_min_max( - cls, # noqa: N805 - value, - values, - ) -> str: - if value < values.data["min_"]: + if self.max_ < self.min_: raise ModelError("max cannot be less than min value") - return value + + return self class DateConverterRange(BaseModel): opposite_range_fields: ClassVar[Dict[str, str]] = {"min": "from_", "max": "to"} - type_: Literal["GA", "GS", "GQ", "GD"] = Field(alias="type") + type_: Literal["GA", "GS", "GQ", "GD"] | None = Field( + default=None, + alias="type", + exclude=True, + ) from_: datetime = Field(alias="from") to: datetime diff --git a/operationsgateway_api/src/records/record.py b/operationsgateway_api/src/records/record.py index f7694b9b..793e201f 100644 --- a/operationsgateway_api/src/records/record.py +++ b/operationsgateway_api/src/records/record.py @@ -487,24 +487,28 @@ async def convert_search_ranges(date_range, shotnum_range): else: raise RecordError("Both date range and shot number range are None") + match_conditions = [ + { + comparison_field_name: { + "$gte": getattr( + range_input, + range_input.opposite_range_fields[min_field_name], + ), + "$lte": getattr( + range_input, + range_input.opposite_range_fields[max_field_name], + ), + }, + }, + ] + + if range_input.type_ is not None: + match_conditions.append({"metadata.active_area": range_input.type_}) + pipeline = [ { "$match": { - "$and": [ - {"metadata.active_area": range_input.type}, - { - comparison_field_name: { - "$gte": getattr( - range_input, - range_input.opposite_range_fields[min_field_name], - ), - "$lte": getattr( - range_input, - range_input.opposite_range_fields[max_field_name], - ), - }, - }, - ], + "$and": match_conditions, }, }, { @@ -522,15 +526,21 @@ async def convert_search_ranges(date_range, shotnum_range): # there's no records stored in the ranges provided by the request, hence # the database is unable to find anything from the query raise DatabaseError("No results have been found from database query") - try: if shotnum_range: - return DateConverterRange(type=range_input.type, **converted_range[0]) + if range_input.type_ is not None: + return DateConverterRange( + type=range_input.type_, + **converted_range[0], + ) + return DateConverterRange(**converted_range[0]) else: - return ShotnumConverterRange( - type=range_input.type, - **converted_range[0], - ) + if range_input.type_ is not None: + return ShotnumConverterRange( + type=range_input.type_, + **converted_range[0], + ) + return ShotnumConverterRange(**converted_range[0]) except ValidationError as exc: raise ModelError(str(exc)) from exc diff --git a/test/endpoints/test_range_converter.py b/test/endpoints/test_range_converter.py index fd9cadc1..47e05b67 100644 --- a/test/endpoints/test_range_converter.py +++ b/test/endpoints/test_range_converter.py @@ -3,6 +3,9 @@ from fastapi.testclient import TestClient import pytest +from operationsgateway_api.src.exceptions import ModelError +from operationsgateway_api.src.models import ShotnumConverterRange + class TestRangeConverter: @pytest.mark.parametrize( @@ -143,3 +146,91 @@ def test_invalid_range_converter( ) assert test_response.status_code == expected_status_code + + +class TestShotnumConverterRange: + """ + Unit tests for the ShotnumConverterRange model. + + These tests validate the handling of both integer and typed string shot numbers: + - Integers are accepted when no type is provided + - Strings are accepted when a valid type (GA, GS, GQ, GD) is provided + - Mixing integers and strings is rejected + - Shot number prefixes must match the specified type + - Range ordering (min <= max) is enforced + - Invalid formats (including GD formatting) are rejected + + These are model-level tests and do not rely on database state as we + don't have any data yet. + """ + + @pytest.mark.parametrize( + "payload", + [ + pytest.param( + {"min": 123, "max": 456}, + id="Int shotnums without type", + ), + pytest.param( + {"type": "GA", "min": "GA123", "max": "GA456"}, + id="GA shotnums with type", + ), + pytest.param( + {"type": "GS", "min": "GS001", "max": "GS999"}, + id="GS shotnums with type", + ), + pytest.param( + {"type": "GQ", "min": "GQ100", "max": "GQ200"}, + id="GQ shotnums with type", + ), + pytest.param( + {"type": "GD", "min": "20240101-120000", "max": "20240101-130000"}, + id="GD shotnums with type", + ), + ], + ) + def test_valid_shotnum_converter_range(self, payload): + model = ShotnumConverterRange(**payload) + + assert model is not None + + @pytest.mark.parametrize( + "payload", + [ + pytest.param( + {"min": "GA123", "max": "GA456"}, + id="String shotnums without type", + ), + pytest.param( + {"type": "GA", "min": 123, "max": 456}, + id="Int shotnums with type", + ), + pytest.param( + {"type": "GA", "min": "GA123", "max": 456}, + id="Mixed min string max int", + ), + pytest.param( + {"type": "GA", "min": 123, "max": "GA456"}, + id="Mixed min int max string", + ), + pytest.param( + {"type": "GS", "min": "GA123", "max": "GA456"}, + id="Shotnums do not match type", + ), + pytest.param( + {"type": "GA", "min": "GA456", "max": "GA123"}, + id="Max less than min for typed shotnums", + ), + pytest.param( + {"min": 456, "max": 123}, + id="Max less than min for int shotnums", + ), + pytest.param( + {"type": "GD", "min": "GD20240101", "max": "GD20240102"}, + id="GD wrong format length", + ), + ], + ) + def test_invalid_shotnum_converter_range(self, payload): + with pytest.raises(ModelError): + ShotnumConverterRange(**payload) From afd85fa5e63de94dab3188fc706636b9dba10b37 Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Thu, 30 Apr 2026 13:37:41 +0000 Subject: [PATCH 31/52] Linting --- operationsgateway_api/src/records/export_handler.py | 2 +- .../src/records/ingestion/channel_checks.py | 6 +++--- operationsgateway_api/src/routes/export.py | 4 ++-- 3 files changed, 6 insertions(+), 6 deletions(-) diff --git a/operationsgateway_api/src/records/export_handler.py b/operationsgateway_api/src/records/export_handler.py index bbddfa0a..c9b511ca 100644 --- a/operationsgateway_api/src/records/export_handler.py +++ b/operationsgateway_api/src/records/export_handler.py @@ -586,7 +586,7 @@ def _add_value_to_csv_line( if value is None or value == "": # leave cell empty in these cases return line + "," - if type(value) == str: + if type(value) is str: # put quotes round string values in case they contain a comma # which would upset the formatting return line + '"' + value + '"' + "," diff --git a/operationsgateway_api/src/records/ingestion/channel_checks.py b/operationsgateway_api/src/records/ingestion/channel_checks.py index 301fdb24..7712ac5d 100644 --- a/operationsgateway_api/src/records/ingestion/channel_checks.py +++ b/operationsgateway_api/src/records/ingestion/channel_checks.py @@ -93,7 +93,7 @@ async def channel_dtype_checks(self): """ ingested_channels = self.ingested_record dump = False - if type(ingested_channels) != dict: + if type(ingested_channels) is not dict: ingested_channels = ingested_channels.channels dump = True @@ -490,7 +490,7 @@ def optional_dtype_checks(self): rejected_channels, ) - if value.metadata.channel_dtype == "string": + elif value.metadata.channel_dtype == "string": rejected_channels = self.string_metadata_checks( key, value.metadata, @@ -539,7 +539,7 @@ def _waveform_dataset_check(self, rejected_channels, value, key, letter): this generates a rejected channel message depending on what was fed to this function (which dataset and why it failed) """ - if type(value) != list: + if type(value) is not list: rejected_channels.append({key: letter + " attribute has wrong shape"}) else: if not all(isinstance(element, float) for element in value): diff --git a/operationsgateway_api/src/routes/export.py b/operationsgateway_api/src/routes/export.py index 9838bee6..0df9827a 100644 --- a/operationsgateway_api/src/routes/export.py +++ b/operationsgateway_api/src/routes/export.py @@ -180,7 +180,7 @@ async def export_records( # ensure the "file pointer" is reset file_bytes_to_export.seek(0) filename = export_handler.get_filename_stem() - if type(file_bytes_to_export) == io.BytesIO: + if type(file_bytes_to_export) is io.BytesIO: # this is a zip file headers = {"Content-Disposition": f'attachment; filename="{filename}.zip"'} return Response( @@ -188,7 +188,7 @@ async def export_records( headers=headers, media_type="application/zip", ) - elif type(file_bytes_to_export) == io.StringIO: + elif type(file_bytes_to_export) is io.StringIO: # this is a csv file headers = {"Content-Disposition": f'attachment; filename="{filename}.csv"'} return Response( From 7a8331e2c285f4c4c5b06ce95cd98cd6ddba0f45 Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Thu, 30 Apr 2026 13:38:03 +0000 Subject: [PATCH 32/52] PR comments --- .../src/records/ingestion/hdf_handler.py | 33 +++++++++++-------- test/sessions/test_user_session.py | 6 ++-- test/sessions/test_user_session_list.py | 4 +-- 3 files changed, 25 insertions(+), 18 deletions(-) diff --git a/operationsgateway_api/src/records/ingestion/hdf_handler.py b/operationsgateway_api/src/records/ingestion/hdf_handler.py index f4557317..30976bd1 100644 --- a/operationsgateway_api/src/records/ingestion/hdf_handler.py +++ b/operationsgateway_api/src/records/ingestion/hdf_handler.py @@ -116,21 +116,31 @@ async def extract_data( self.internal_failed_channel, ) - def _parse_data_timestamp(self, timestamp): + def _parse_data_timestamp( + self, + timestamp: str | bytes | None, + ) -> datetime: + """ + Parse a timestamp value from HDF metadata into a datetime object. + + The timestamp is expected to be an ISO 8601 formatted string, for example: + "2025-04-07T14:28:16.123+00:00" or without milliseconds. A trailing + "Z" (UTC) is also supported and will be normalised to "+00:00". + """ + + error_message = ( + "Invalid timestamp metadata. Expected 'timestamp' like " + "'2025-04-07T14:28:16.123+00:00' or without milliseconds." + ) + if timestamp in (None, ""): - raise HDFDataExtractionError( - "Invalid timestamp metadata. Expected 'timestamp' like " - "'2025-04-07T14:28:16.123+00:00' or without milliseconds.", - ) + raise HDFDataExtractionError(error_message) if isinstance(timestamp, bytes): timestamp = timestamp.decode() if not isinstance(timestamp, str): - raise HDFDataExtractionError( - "Invalid timestamp metadata. Expected 'timestamp' like " - "'2025-04-07T14:28:16.123+00:00' or without milliseconds.", - ) + raise HDFDataExtractionError(error_message) if timestamp.endswith("Z"): timestamp = timestamp[:-1] + "+00:00" @@ -142,10 +152,7 @@ def _parse_data_timestamp(self, timestamp): except (ValueError, TypeError) as exc: last_exc = exc - raise HDFDataExtractionError( - "Invalid timestamp metadata. Expected 'timestamp' like " - "'2025-04-07T14:28:16.123+00:00' or without milliseconds.", - ) from last_exc + raise HDFDataExtractionError(error_message) from last_exc def _create_record_id(self, timestamp: datetime) -> str: """ diff --git a/test/sessions/test_user_session.py b/test/sessions/test_user_session.py index 872c024e..5e35b72a 100644 --- a/test/sessions/test_user_session.py +++ b/test/sessions/test_user_session.py @@ -6,7 +6,7 @@ import pytest from operationsgateway_api.src.auth.jwt_handler import JwtHandler -from operationsgateway_api.src.constants import DATA_DATETIME_FORMATS +from operationsgateway_api.src.constants import SESSION_DATETIME_FORMAT from operationsgateway_api.src.exceptions import ( DatabaseError, DuplicateSessionError, @@ -29,7 +29,7 @@ class TestUserSession: "username": "Test User", "name": "Test Session", "summary": "Test Summary", - "timestamp": datetime.strftime(datetime.now(), DATA_DATETIME_FORMATS[1]), + "timestamp": datetime.strftime(datetime.now(), SESSION_DATETIME_FORMAT), "auto_saved": False, "session": {"sessionData": [1, 2, 3]}, } @@ -46,7 +46,7 @@ async def test_valid_get(self): "username": "Test User", "name": "Test Session", "summary": "Test Summary", - "timestamp": datetime.strftime(datetime.now(), DATA_DATETIME_FORMATS[1]), + "timestamp": datetime.strftime(datetime.now(), SESSION_DATETIME_FORMAT), "auto_saved": False, "session": {"sessionData": [1, 2, 3]}, } diff --git a/test/sessions/test_user_session_list.py b/test/sessions/test_user_session_list.py index 0d573c79..3ab33f49 100644 --- a/test/sessions/test_user_session_list.py +++ b/test/sessions/test_user_session_list.py @@ -3,7 +3,7 @@ import pytest -from operationsgateway_api.src.constants import DATA_DATETIME_FORMATS +from operationsgateway_api.src.constants import SESSION_DATETIME_FORMAT from operationsgateway_api.src.models import UserSessionListModel from operationsgateway_api.src.sessions.user_session_list import UserSessionList @@ -25,7 +25,7 @@ async def test_get_session_list(self, _): "summary": "Test Summary", "timestamp": datetime.strftime( datetime.now(), - DATA_DATETIME_FORMATS[1], + SESSION_DATETIME_FORMAT, ), "auto_saved": False, "session": {"mySessionData": [1, 2, 3]}, From 54facc6738f1e41803e646be31b1aea8f2b16b8e Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Thu, 30 Apr 2026 13:38:19 +0000 Subject: [PATCH 33/52] newer deps and lock file --- poetry.lock | 637 ++++++++++++++++++++++++++----------------------- pyproject.toml | 5 +- 2 files changed, 338 insertions(+), 304 deletions(-) diff --git a/poetry.lock b/poetry.lock index 60720d29..9c68d0dd 100644 --- a/poetry.lock +++ b/poetry.lock @@ -306,18 +306,19 @@ files = [ [[package]] name = "authlib" -version = "1.6.10" +version = "1.7.0" description = "The ultimate Python library in building OAuth and OpenID Connect servers and clients." optional = false -python-versions = ">=3.9" +python-versions = ">=3.10" groups = ["main", "dev"] files = [ - {file = "authlib-1.6.10-py2.py3-none-any.whl", hash = "sha256:aa639b43292554539924a3b4aaa9e81cd67ab64d3e28b22428c61f1200240287"}, - {file = "authlib-1.6.10.tar.gz", hash = "sha256:856a4f54d6ef3361ca6bb6d14a27e8b88f8097cca795fb428ffe13720e2ecde6"}, + {file = "authlib-1.7.0-py2.py3-none-any.whl", hash = "sha256:e36817afb02f6f0b6bf55f150782499ddd6ddf44b402bb055d3263cc65ac9ae0"}, + {file = "authlib-1.7.0.tar.gz", hash = "sha256:b3e326c9aa9cc3ea95fe7d89fd880722d3608da4d00e8a27e061e64b48d801d5"}, ] [package.dependencies] cryptography = "*" +joserfc = ">=1.6.0" [[package]] name = "bcrypt" @@ -501,14 +502,14 @@ files = [ [[package]] name = "certifi" -version = "2026.2.25" +version = "2026.4.22" description = "Python package for providing Mozilla's CA Bundle." optional = false python-versions = ">=3.7" groups = ["main", "dev"] files = [ - {file = "certifi-2026.2.25-py3-none-any.whl", hash = "sha256:027692e4402ad994f1c42e52a4997a9763c646b73e4096e4d5d6db8af1d6f0fa"}, - {file = "certifi-2026.2.25.tar.gz", hash = "sha256:e887ab5cee78ea814d3472169153c2d12cd43b14bd03329a39a9c6e2e80bfba7"}, + {file = "certifi-2026.4.22-py3-none-any.whl", hash = "sha256:3cb2210c8f88ba2318d29b0388d1023c8492ff72ecdde4ebdaddbb13a31b1c4a"}, + {file = "certifi-2026.4.22.tar.gz", hash = "sha256:8d455352a37b71bf76a79caa83a3d6c25afee4a385d632127b6afb3963f1c580"}, ] [[package]] @@ -1231,32 +1232,32 @@ standard-no-fastapi-cloud-cli = ["email-validator (>=2.0.0)", "fastapi-cli[stand [[package]] name = "filelock" -version = "3.25.2" +version = "3.29.0" description = "A platform independent file lock." optional = false python-versions = ">=3.10" groups = ["dev"] files = [ - {file = "filelock-3.25.2-py3-none-any.whl", hash = "sha256:ca8afb0da15f229774c9ad1b455ed96e85a81373065fb10446672f64444ddf70"}, - {file = "filelock-3.25.2.tar.gz", hash = "sha256:b64ece2b38f4ca29dd3e810287aa8c48182bbecd1ae6e9ae126c9b35f1382694"}, + {file = "filelock-3.29.0-py3-none-any.whl", hash = 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"pytest-cov", "pytest-timeo [[package]] name = "setuptools" -version = "82.0.1" -description = "Most extensible Python build backend with support for C/C++ extension modules" +version = "81.0.0" +description = "Easily download, build, install, upgrade, and uninstall Python packages" optional = false python-versions = ">=3.9" groups = ["dev"] files = [ - {file = "setuptools-82.0.1-py3-none-any.whl", hash = "sha256:a59e362652f08dcd477c78bb6e7bd9d80a7995bc73ce773050228a348ce2e5bb"}, - {file = "setuptools-82.0.1.tar.gz", hash = "sha256:7d872682c5d01cfde07da7bccc7b65469d3dca203318515ada1de5eda35efbf9"}, + {file = "setuptools-81.0.0-py3-none-any.whl", hash = "sha256:fdd925d5c5d9f62e4b74b30d6dd7828ce236fd6ed998a08d81de62ce5a6310d6"}, + {file = "setuptools-81.0.0.tar.gz", hash = "sha256:487b53915f52501f0a79ccfd0c02c165ffe06631443a886740b91af4b7a5845a"}, ] [package.extras] check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1) ; sys_platform != \"cygwin\"", "ruff (>=0.13.0) ; sys_platform != \"cygwin\""] -core = ["importlib_metadata (>=6) ; python_version < \"3.10\"", "jaraco.functools (>=4)", "jaraco.text (>=3.7)", "more_itertools", "more_itertools (>=8.8)", "packaging (>=24.2)", "tomli (>=2.0.1) ; python_version < \"3.11\"", "wheel (>=0.43.0)"] +core = ["importlib_metadata (>=6) ; python_version < \"3.10\"", "jaraco.functools (>=4)", "jaraco.text (>=3.7)", "more_itertools", "more_itertools (>=8.8)", "packaging (>=24.2)", "platformdirs (>=4.2.2)", "tomli (>=2.0.1) ; python_version < \"3.11\"", "wheel (>=0.43.0)"] cover = ["pytest-cov"] doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "pyproject-hooks (!=1.1)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier", "towncrier (<24.7)"] enabler = ["pytest-enabler (>=2.2)"] @@ -4894,4 +4927,4 @@ xmlsec = ["xmlsec (>=0.6.1)"] [metadata] lock-version = "2.1" python-versions = ">=3.11,<3.12" -content-hash = "ffa2b5a7566d2672865c35e6dcf08543c4e658e9c61792a6182b0f298fefdafa" +content-hash = "e1c51b3dba8e88dc5afe313b995c9cd97176d86b099182599e526d0ef3559e56" diff --git a/pyproject.toml b/pyproject.toml index 98925fc9..299f21ce 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -54,13 +54,14 @@ starlette = "^0.49.1" [tool.poetry.group.dev.dependencies] black = "^26.3.1" -flake8 = "^5.0.4" +flake8 = "^7.3.0" flake8-black = "^0.4.0" flake8-bugbear = "^22.4.25" flake8-builtins = "^1.5.3" flake8-commas = "^4.0.0" flake8-comprehensions = "^3.3.0" flake8-import-order = "^0.19.2" +flake8-logging-format = "^2024.24.12" pep8-naming = "^0.12.1" safety = "^3.5.2" pytest = "^9.0.3" @@ -92,4 +93,4 @@ show_missing = true [build-system] requires = ["poetry-core>=1.0.0"] -build-backend = "poetry.core.masonry.api" +build-backend = "poetry.core.masonry.api" \ No newline at end of file From 2e0e7324696effe9301c20019858db6105133801 Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Thu, 30 Apr 2026 13:39:11 +0000 Subject: [PATCH 34/52] removing ignore --- noxfile.py | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/noxfile.py b/noxfile.py index 28bb0830..29c35265 100644 --- a/noxfile.py +++ b/noxfile.py @@ -27,6 +27,18 @@ def lint(session): def safety(session): session.env["POETRY_VIRTUALENVS_CREATE"] = "false" session.run("poetry", "install", "--without", "simulated-data", external=True) + session.run( + "poetry", + "run", + "python", + "-m", + "pip", + "install", + "--upgrade", + "pip>=26.0", + external=True, + ) + # Can't fix 70790 because epac data sim uses it session.run( "poetry", From fd8aa7b21991934804f537fdf34740618a84f65d Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Wed, 6 May 2026 10:42:17 +0000 Subject: [PATCH 35/52] Updated postman script to include gemini record condition example --- util/og_api_postman_collection.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/util/og_api_postman_collection.json b/util/og_api_postman_collection.json index 2266076f..25b0446f 100644 --- a/util/og_api_postman_collection.json +++ b/util/og_api_postman_collection.json @@ -90,7 +90,7 @@ "bearer": [ { "key": "token", - "value": "eyJhbGciOiJSUzI1NiIsInR5cCIgOiAiSldUIiwia2lkIiA6ICJkWnF1MmhGcjJrNlNCNUkzNmx2ODRaTlNWdzM4UEtiWURsVW9QcGdrOFdRIn0.eyJleHAiOjE3NTMyNzA1NzIsImlhdCI6MTc1MzI3MDI3MiwiYXV0aF90aW1lIjowLCJqdGkiOiJjYzliYzVmNS01YWNhLTQwMzYtYWFmYy1iYjJlMTE2ZWY2MDAiLCJpc3MiOiJodHRwOi8vbG9jYWxob3N0OjgwODEvcmVhbG1zL3Rlc3RyZWFsbSIsImF1ZCI6Im9wZXJhdGlvbnMtZ2F0ZXdheSIsInN1YiI6Ijc4NDk3MTBhLWNhNjEtNGI5Yy05ZDYxLWFiNmM5MDdjZTg1YyIsInR5cCI6IklEIiwiYXpwIjoib3BlcmF0aW9ucy1nYXRld2F5Iiwic2Vzc2lvbl9zdGF0ZSI6IjI4YzBiMzUxLWY5ODYtNGYwYS1hMTY5LTA5ZWFiM2FmNTg5MSIsImF0X2hhc2giOiJhS3VIZTZJRFpBYjd0MjY1aXM5X0dBIiwic2lkIjoiMjhjMGIzNTEtZjk4Ni00ZjBhLWExNjktMDllYWIzYWY1ODkxIiwiZW1haWxfdmVyaWZpZWQiOnRydWUsImdpdmVuX25hbWUiOiJBbGljZSIsImZhbWlseV9uYW1lIjoiRXhhbXBsZSIsImVtYWlsIjoiYWxleGFuZGVyLmtlbXBAc3RmYy5hYy51ayJ9.lnw5TxsRyTKlBIUoLdiQbzb54e2DJoBT8xoc4Su2h-ElMXmv7uawRFlre3LhTpjmwxjMPe1Sy0JY3e7Vxk_xJkB46ln11g-C_75CaDcSywvARJCuiPBRQr0w5-JXhaFqOnQne5u3YOxcVUCMQTdfPl2UY9LXIPCB2TO-BgRjP5Z6lcCcyox5gBhNUQJyVCmlKJO8nPPUV9KQ-9JRgg69qDoY2v_YKwlycJHAyVWmaV5C2EM9dwYx_6LG7X4z0trJyPDH7NurYq8riJebtxEtwGBK9lETZGI0Bdb4fSX-sKMQuxNkAnaBXgmljOKQQE6VMKuHK3P66XdVuczAdLWQHQ", + "value": "", "type": "string" } ] From 09d3d469bbe5be7addc5f72162e18d383b372ca1 Mon Sep 17 00:00:00 2001 From: Patrick Austin Date: Thu, 7 May 2026 15:44:13 +0000 Subject: [PATCH 36/52] Overhaul tests to account for Gemini data format and features --- .flake8 | 2 +- .github/ci_config.yml | 2 +- .github/ci_ingest_echo_config.yml | 10 +- .github/workflows/ci.yml | 145 +- .gitignore | 3 + README.md | 20 +- docs/developer/test_data.md | 4 + noxfile.py | 30 + operationsgateway_api/src/config.py | 48 +- .../src/records/ingestion/hdf_handler.py | 2 +- poetry.lock | 62 +- pyproject.toml | 2 + test/conftest.py | 124 +- test/endpoints/conftest.py | 25 +- test/endpoints/test_channel_summary.py | 68 +- test/endpoints/test_count_records.py | 30 +- test/endpoints/test_export.py | 525 ++---- .../endpoints/test_get_crosshair_intensity.py | 16 +- test/endpoints/test_get_float_image.py | 20 +- test/endpoints/test_get_image.py | 29 +- test/endpoints/test_get_record_by_id.py | 37 +- test/endpoints/test_get_records.py | 397 ++++- test/endpoints/test_get_vector.py | 10 +- test/endpoints/test_get_waveform_by_id.py | 16 +- test/endpoints/test_manifest.json | 5 + test/endpoints/test_range_converter.py | 132 +- test/endpoints/test_submit_hdf.py | 33 +- .../20230605070600_to_20230605120000.csv | 16 - test/export/20230605080000123.csv | 2 + ...20230605080000123_to_20230605080300234.csv | 3 + ...123_to_20230605080300234_FE-204-PSO-EM.csv | 1 + ...30605080000123_to_20230605080300234_ID.csv | 3 + ...605080000123_to_20230605080300234_desc.csv | 3 + ...0000123_to_20230605080300234_functions.csv | 3 + ...080000123_to_20230605080300234_incl_id.csv | 3 + ...20230605080000123_to_20230605170000345.csv | 4 + .../20230605080000_to_20230605080300.csv | 3 + ...080000_to_20230605080300_FE-204-PSO-EM.csv | 3 + .../20230605080000_to_20230605080300_ID.csv | 3 + .../20230605080000_to_20230605080300_desc.csv | 3 + ...0605080000_to_20230605080300_functions.csv | 3 + ...230605080000_to_20230605080300_incl_id.csv | 3 + ...080000_to_20230605120000_FE-204-PSO-EM.csv | 6 - .../20230605080000_to_20230605120000_ID.csv | 6 - .../20230605080000_to_20230605120000_asc.csv | 6 - ...05080000_to_20230605120000_asc_incl_id.csv | 6 - .../20230605080000_to_20230605120000_desc.csv | 6 - ...0605080000_to_20230605120000_functions.csv | 6 - .../20230605080000_to_20230605170000.csv | 4 + ...30605080300_asc.csv => 20230605080300.csv} | 0 test/export/20230605080300234.csv | 2 + test/export/20230605080300234_no_channels.csv | 2 + .../20230605080300_FE-204-PSO-P1-SP.csv | 1516 +++++++++++++++++ .../20230605090000_FE-204-PSO-P1-SP.csv | 1516 ----------------- .../20230605100000_FE-204-PSO-P1-SP.csv | 1516 ----------------- ...30605100000_to_20230605110000_desc_s_l.csv | 3 - .../20230605110000_FE-204-PSO-P1-SP.csv | 1516 ----------------- .../20230605120000_FE-204-PSO-P1-SP.csv | 1516 ----------------- ...PORT_ERRORS.txt => EPAC_EXPORT_ERRORS.txt} | 0 test/export/GEMINI_EXPORT_ERRORS.txt | 2 + test/pytest.ini.example | 20 + test/records/ingestion/create_test_hdf.py | 16 + test/records/ingestion/test_channel.py | 12 + test/records/ingestion/test_hdf_handler.py | 6 + test/records/ingestion/test_partial_import.py | 8 +- test/records/test_echo_interface.py | 4 +- test/records/test_record_retriever.py | 41 +- test/test_config_fails.py | 10 - util/realistic_data/config.yml.example | 11 +- util/realistic_data/daily_ingestor.py | 9 +- util/realistic_data/ingest/api_client.py | 17 +- util/realistic_data/ingest/api_starter.py | 28 +- util/realistic_data/ingest/config.py | 64 +- .../ingest/database_operations.py | 10 +- util/realistic_data/ingest/s3_interface.py | 38 +- util/realistic_data/ingest_echo_data.py | 190 ++- 76 files changed, 3045 insertions(+), 6921 deletions(-) delete mode 100644 test/export/20230605070600_to_20230605120000.csv create mode 100644 test/export/20230605080000123.csv create mode 100644 test/export/20230605080000123_to_20230605080300234.csv create mode 120000 test/export/20230605080000123_to_20230605080300234_FE-204-PSO-EM.csv create mode 100644 test/export/20230605080000123_to_20230605080300234_ID.csv create mode 100644 test/export/20230605080000123_to_20230605080300234_desc.csv create mode 100644 test/export/20230605080000123_to_20230605080300234_functions.csv create mode 100644 test/export/20230605080000123_to_20230605080300234_incl_id.csv create mode 100644 test/export/20230605080000123_to_20230605170000345.csv create mode 100644 test/export/20230605080000_to_20230605080300.csv create mode 100644 test/export/20230605080000_to_20230605080300_FE-204-PSO-EM.csv create mode 100644 test/export/20230605080000_to_20230605080300_ID.csv create mode 100644 test/export/20230605080000_to_20230605080300_desc.csv create mode 100644 test/export/20230605080000_to_20230605080300_functions.csv create mode 100644 test/export/20230605080000_to_20230605080300_incl_id.csv delete mode 100644 test/export/20230605080000_to_20230605120000_FE-204-PSO-EM.csv delete mode 100644 test/export/20230605080000_to_20230605120000_ID.csv delete mode 100644 test/export/20230605080000_to_20230605120000_asc.csv delete mode 100644 test/export/20230605080000_to_20230605120000_asc_incl_id.csv delete mode 100644 test/export/20230605080000_to_20230605120000_desc.csv delete mode 100644 test/export/20230605080000_to_20230605120000_functions.csv create mode 100644 test/export/20230605080000_to_20230605170000.csv rename test/export/{20230605080300_asc.csv => 20230605080300.csv} (100%) create mode 100644 test/export/20230605080300234.csv create mode 100644 test/export/20230605080300234_no_channels.csv create mode 100644 test/export/20230605080300_FE-204-PSO-P1-SP.csv delete mode 100644 test/export/20230605090000_FE-204-PSO-P1-SP.csv delete mode 100644 test/export/20230605100000_FE-204-PSO-P1-SP.csv delete mode 100644 test/export/20230605100000_to_20230605110000_desc_s_l.csv delete mode 100644 test/export/20230605110000_FE-204-PSO-P1-SP.csv delete mode 100644 test/export/20230605120000_FE-204-PSO-P1-SP.csv rename test/export/{EXPORT_ERRORS.txt => EPAC_EXPORT_ERRORS.txt} (100%) create mode 100644 test/export/GEMINI_EXPORT_ERRORS.txt create mode 100644 test/pytest.ini.example diff --git a/.flake8 b/.flake8 index 034103dc..2ee686be 100644 --- a/.flake8 +++ b/.flake8 @@ -4,7 +4,7 @@ select = A,B,B9,BLK,C,E,F,I,N,S,W ignore = E203,W503,E501,B905,E704,C901 max-complexity = 12 max-line-length = 80 -application-import-names = operationsgateway_api,test +application-import-names = operationsgateway_api,util,test import-order-style = google enable-extensions=G per-file-ignores = diff --git a/.github/ci_config.yml b/.github/ci_config.yml index 45543679..30c824d9 100644 --- a/.github/ci_config.yml +++ b/.github/ci_config.yml @@ -6,7 +6,7 @@ app: url_prefix: "" maintenance_file: operationsgateway_api/maintenance.json.example scheduled_maintenance_file: operationsgateway_api/scheduled_maintenance.json.example - use_sub_second_timestamps: false + # use_sub_second_timestamps: set by env images: thumbnail_size: [50, 50] default_colour_map: viridis diff --git a/.github/ci_ingest_echo_config.yml b/.github/ci_ingest_echo_config.yml index 1b8f2d68..7f848840 100644 --- a/.github/ci_ingest_echo_config.yml +++ b/.github/ci_ingest_echo_config.yml @@ -11,12 +11,11 @@ database: connection_uri: mongodb://localhost:27017/opsgateway remote_experiments_file_path: /tmp/experiments_for_mongoimport.json test_users_file_path: util/users_for_mongoimport.json -echo: +source: endpoint_url: https://s3.echo.stfc.ac.uk - access_key: access_key - secret_key: secret_key - simulated_data_bucket: og-ci-simulated-data - storage_bucket: og-bucket + # access_key: set by env + # secret_key: set by env + # simulated_data_bucket: set by env page_size: 400 api: https: false @@ -27,6 +26,7 @@ api: log_config_path: /home/runner/work/operationsgateway-api/operationsgateway-api/operationsgateway_api/logging.ini gunicorn_num_workers: "1" timeout_seconds: 1000 + storage_bucket: og-bucket observability: # used to view logs and traces in Elasticsearch run by Platforms & Services environment: dev diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index dcd8f5cc..838e481c 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -1,4 +1,6 @@ name: CI +permissions: + contents: read on: workflow_dispatch: pull_request: @@ -7,12 +9,12 @@ on: - main jobs: - tests: + tests_epac: strategy: fail-fast: false runs-on: ubuntu-24.04 - name: Python 3.11 Tests + name: Python 3.11 Tests EPAC steps: - name: Checkout OperationsGateway API uses: actions/checkout@v3 @@ -77,7 +79,7 @@ jobs: export AWS_ACCESS_KEY_ID=minioadmin export AWS_SECRET_ACCESS_KEY=minioadmin export AWS_EC2_METADATA_DISABLED=true - aws --endpoint-url http://127.0.0.1:9000/ s3 mb s3://og-actions-test + aws --endpoint-url http://127.0.0.1:9000/ s3 mb s3://og-test-epac - name: Move CI config.yml to correct place run: cp .github/ci_config.yml operationsgateway_api/config.yml @@ -102,30 +104,145 @@ jobs: env: SSH_KEY_PUBLIC: ${{secrets.SSH_PUBLIC_KEY_FOR_AUTH_OPENSSH}} - # Setup steps for Echo ingestion script - - name: Configure echo access key - run: yq -i ".echo.access_key = \"$ECHO_S3_ACCESS_KEY\"" .github/ci_ingest_echo_config.yml - env: - ECHO_S3_ACCESS_KEY: ${{secrets.ECHO_S3_ACCESS_KEY}} - - name: Configure echo secret key - run: yq -i ".echo.secret_key = \"$ECHO_S3_SECRET_KEY\"" .github/ci_ingest_echo_config.yml - env: - ECHO_S3_SECRET_KEY: ${{secrets.ECHO_S3_SECRET_KEY}} - name: Copy config for Echo Ingest script to correct place run: cp .github/ci_ingest_echo_config.yml util/realistic_data/config.yml - name: Run Echo Ingest script run: poetry run python util/realistic_data/ingest_echo_data.py - - # Run Nox tests session, saves and uploads a coverage report to codecov + env: + # App config: + APP__USE_SUB_SECOND_TIMESTAMPS: False + # Ingest config: + SOURCE__ACCESS_KEY: ${{secrets.ECHO_S3_ACCESS_KEY}} + SOURCE__SECRET_KEY: ${{secrets.ECHO_S3_SECRET_KEY}} + SOURCE__SIMULATED_DATA_BUCKET: og-simulated-data-epac + + # Run EPAC tests session, saves and uploads a coverage report to codecov - name: Run Nox tests session run: nox -s tests -- --cov=operationsgateway_api --cov-report=xml + env: + # App config: + APP__USE_SUB_SECOND_TIMESTAMPS: False - name: Upload code coverage report uses: codecov/codecov-action@v3 with: token: ${{ secrets.CODECOV_TOKEN }} + tests-gemini: + strategy: + fail-fast: false + runs-on: ubuntu-24.04 + + name: Python 3.11 Tests Gemini + steps: + - name: Checkout OperationsGateway API + uses: actions/checkout@v3 + + # Install system dependencies + - name: Install system dependencies + run: | + sudo apt-get update + sudo apt-get install -y build-essential cmake uuid-dev libsasl2-dev libldap2-dev libssl-dev + + - name: Setup Python + uses: actions/setup-python@v4 + with: + python-version: "3.11" + + - name: Load Pip cache + uses: actions/cache@v3 + with: + path: ~/.cache/pip + key: ${{ runner.os }}-pip-3.11-${{ env.pythonLocation }}-${{ hashFiles('.github/ci_requirements.txt') }} + - name: Install Poetry & Nox + run: pip install -r .github/ci_requirements.txt + + # Install and start MongoDB + - name: Start MongoDB + uses: supercharge/mongodb-github-action@1.12.1 + with: + mongodb-version: '7.0' + + # Used to install mongoimport when Ubuntu 22.04 is used, identified at https://github.com/actions/runner-images/issues/6626#issuecomment-1327744126 + - name: Install MongoDB Database Tools + run: | + sudo apt-get update + sudo apt-get install -y wget gnupg + wget -qO - https://www.mongodb.org/static/pgp/server-7.0.asc | sudo apt-key add - + echo "deb [ arch=amd64,arm64 ] https://repo.mongodb.org/apt/ubuntu jammy/mongodb-org/7.0 multiverse" | sudo tee /etc/apt/sources.list.d/mongodb-org-7.0.list + sudo apt-get update + sudo apt-get install -y mongodb-database-tools + + # Read the database name from the config file and store it in an environment variable + - name: Get database name from ci_config.yml + run: echo "DATABASE_NAME=$(grep database_name .github/ci_config.yml | cut -d ':' -f 2 | tr -d '[:space:]')" >> $GITHUB_ENV + + # Load Poetry virtual environment dependencies and install API dependencies + - name: Load Poetry cache + uses: actions/cache@v3 + with: + path: ~/.cache/pypoetry + key: ${{ runner.os }}-poetry-3.11-${{ hashFiles('poetry.lock') }} + - name: Install dependencies + run: poetry install --without simulated-data + + # Setup minio and create bucket + - name: Setup minio + run: | + docker run -d -p 9000:9000 --name minio \ + -e "MINIO_ACCESS_KEY=minioadmin" \ + -e "MINIO_SECRET_KEY=minioadmin" \ + -v /tmp/data:/data \ + -v /tmp/config:/root/.minio \ + minio/minio server /data + export AWS_ACCESS_KEY_ID=minioadmin + export AWS_SECRET_ACCESS_KEY=minioadmin + export AWS_EC2_METADATA_DISABLED=true + aws --endpoint-url http://127.0.0.1:9000/ s3 mb s3://og-actions-test + - name: Move CI config.yml to correct place + run: cp .github/ci_config.yml operationsgateway_api/config.yml + + - name: Setup logging configuration + run: cp operationsgateway_api/logging.ini.example operationsgateway_api/logging.ini + + - name: Create log file + run: touch "$GITHUB_WORKSPACE/logs.log" + + - name: Create SSH private key file for auth + run: 'echo "$SSH_KEY_PRIVATE" > /home/runner/work/operationsgateway-api/id_rsa' + shell: bash + env: + SSH_KEY_PRIVATE: ${{secrets.SSH_PRIVATE_KEY_FOR_AUTH_OPENSSH}} + + - name: Set permissions on private key file + run: chmod 600 /home/runner/work/operationsgateway-api/id_rsa + + - name: Create SSH public key file for auth + run: 'echo "$SSH_KEY_PUBLIC" > /home/runner/work/operationsgateway-api/id_rsa.pub' + shell: bash + env: + SSH_KEY_PUBLIC: ${{secrets.SSH_PUBLIC_KEY_FOR_AUTH_OPENSSH}} + + - name: Copy config for Echo Ingest script to correct place + run: cp .github/ci_ingest_echo_config.yml util/realistic_data/config.yml + + - name: Run Echo Ingest script + run: poetry run python util/realistic_data/ingest_echo_data.py + env: + # App config: + APP__USE_SUB_SECOND_TIMESTAMPS: False + # Ingest config: + SOURCE__ACCESS_KEY: ${{secrets.ECHO_S3_ACCESS_KEY}} + SOURCE__SECRET_KEY: ${{secrets.ECHO_S3_SECRET_KEY}} + SOURCE__SIMULATED_DATA_BUCKET: og-simulated-data-gemini + + # Run Gemini tests session, print coverage but do not upload + - name: Run Nox tests session + run: nox -s tests -- --cov=operationsgateway_api --cov-report=term-missing + env: + APP__USE_SUB_SECOND_TIMESTAMPS: True + linting: runs-on: ubuntu-latest name: Code Linting diff --git a/.gitignore b/.gitignore index 8d3abadd..5160f7b0 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,5 @@ +.tmp +.venv venv/ .idea/ *.pyc @@ -16,6 +18,7 @@ id_rsa id_rsa.pub logging.ini* !logging.ini.example +pytest*.ini util/realistic_data/data util/realistic_data/resources docs/site diff --git a/README.md b/README.md index 79970379..c81b3232 100644 --- a/README.md +++ b/README.md @@ -142,9 +142,7 @@ export XrdSecSSSKT=/path/to/.keytab ## Test Data -A script has been created to set up the API with some test data and test users. This script also comes with a configuration file that needs to be reviewed and renamed at `util/realistic_data/config.yml.example`. - -Once the appropriate configuration has been entered, run the script using Poetry: +A script has been created to set up the API with some test data and test users. This script also comes with a configuration file that needs to be reviewed and renamed at `util/realistic_data/config.yml.example`. Note that the example comes pre-populated with example values for `epac` and `gemini` style test data, affecting the source and destination for the test data. The ingest will run automatically as part of `pytest` via the fixtures (see [Testing](#testing)), but it can also be run explicitly using Poetry: ```bash poetry run python util/realistic_data/ingest_echo_data.py @@ -166,6 +164,18 @@ Alternatively, you can use the Postman requests in this repo. This gives a more ## Testing +While initially developed for a single facility (EPAC), the API is now designed to support multiple facilities with specific anticipated behaviour. This behaviour is controlled by configuration settings. These settings should be applied both during ingest of test data and while the tests are run. For ease, there is a `"session"` scoped fixture which ingests the test data, but only if the database is empty. This means when developing locally, the first execution of the tests may hang for around 4 minutes while ingestion occurs, but subsequent executions will start testing immediately. + +By default, the "usual" location of the configuration at [operationsgateway_api/config.yml](operationsgateway_api/config.yml) will apply, but pytest can be configured to override settings using the `pytest-env` plugin. + +### pytest.ini + +To support test suites for EPAC and Gemini style data, [test/pytest.ini.example](test/pytest.ini.example) contains sections for both facilities. This file can be copied to `test/pytest_epac.ini` and `test/pytest_gemini.ini` with the appropriate settings. + +It will also be necessary to choose bucket name(s) (i.e. replace `yourname`) and create a bucket and Mongo database with the corresponding name(s) before the tests will run. + +### nox + Like the [DataGateway API](https://github.com/ral-facilities/datagateway-api), this repository contains a [Nox](https://nox.thea.codes) file (`noxfile.py`), which exists at the root level of this repository. To install Nox, use the following command: @@ -185,5 +195,7 @@ The following Nox sessions have been created: - `black` - This uses Black to format Python code in a pre-defined style. - `lint` - This uses [flake8](https://flake8.pycqa.org/en/latest/) with a number of additional plugins to lint the code to keep it Pythonic. - `safety` - This uses [safety](https://github.com/pyupio/safety) to check the dependencies (pulled directly from Poetry) for any known vulnerabilities. -- `tests` - this uses [pytest](https://docs.pytest.org/en/stable/) to execute the automated tests in `test/`. +- `tests` - This uses [pytest](https://docs.pytest.org/en/stable/) to execute the automated tests in `test/`. Note that this runs without any additional configuration, so will use whatever values are in the locally defined config plus the default `pytest.ini` overrides. +- `tests_epac` - This uses [pytest](https://docs.pytest.org/en/stable/) to execute the automated tests in `test/`. Note that this expects `pytest_epac.ini` to be defined with appropriate settings (i.e. `APP__USE_SUB_SECOND_TIMESTAMPS=False`) +- `tests_gemini` - This uses [pytest](https://docs.pytest.org/en/stable/) to execute the automated tests in `test/`. Note that this expects `pytest_gemini.ini` to be defined with appropriate settings (i.e. `APP__USE_SUB_SECOND_TIMESTAMPS=True`) diff --git a/docs/developer/test_data.md b/docs/developer/test_data.md index eb66437b..bb58ab0c 100644 --- a/docs/developer/test_data.md +++ b/docs/developer/test_data.md @@ -67,5 +67,9 @@ Depending on which options are enabled, the script will do the following things: - Ingest HDF files and a channel manifest file - Stop the API +### Facility specific data + +Now that there is facility specific functionality/data formats, the single bucket for simulated data has been replaced with two buckets which are facility specific and contain a smaller number of hdf files to reduce ingest time in the CI/CD workflows. The names for these buckets are defined in [test/pytest.ini.example](test/pytest.ini.example), and will be used by configuring the `pytest.ini` files as specified in the [README](/README.md). + ## Reverting from Simulated Data back to Gemini Data As previously stated, there may be cases where you have simulated data loaded into your development environment and you need to reload the Gemini data. As the script used to load Gemini data contains options to wipe the database and Echo, there should be no additional steps required. Clone the test data repo, run the script and check the tests pass! diff --git a/noxfile.py b/noxfile.py index 29c35265..2d990a05 100644 --- a/noxfile.py +++ b/noxfile.py @@ -58,3 +58,33 @@ def tests(session): session.env["POETRY_VIRTUALENVS_CREATE"] = "false" session.run("poetry", "install", "--without", "simulated-data", external=True) session.run("poetry", "run", "pytest", *args, external=True) + + +@nox.session(python=False) +def tests_epac(session): + args = session.posargs + session.env["POETRY_VIRTUALENVS_CREATE"] = "false" + session.run("poetry", "install", "--without", "simulated-data", external=True) + session.run( + "poetry", + "run", + "pytest", + "--config-file=test/pytest_epac.ini", + *args, + external=True, + ) + + +@nox.session(python=False) +def tests_gemini(session): + args = session.posargs + session.env["POETRY_VIRTUALENVS_CREATE"] = "false" + session.run("poetry", "install", "--without", "simulated-data", external=True) + session.run( + "poetry", + "run", + "pytest", + "--config-file=test/pytest_gemini.ini", + *args, + external=True, + ) diff --git a/operationsgateway_api/src/config.py b/operationsgateway_api/src/config.py index 05048410..3ec1c144 100644 --- a/operationsgateway_api/src/config.py +++ b/operationsgateway_api/src/config.py @@ -1,7 +1,7 @@ from datetime import datetime from pathlib import Path import sys -from typing import Annotated, List, Optional, Tuple +from typing import Annotated, List, Optional, Tuple, Type import annotated_types from dateutil import tz @@ -17,10 +17,14 @@ StrictBool, StrictInt, StrictStr, - ValidationError, +) +from pydantic_settings import ( + BaseSettings, + PydanticBaseSettingsSource, + SettingsConfigDict, + YamlConfigSettingsSource, ) from xrootd_utils.common import AutoRemove -import yaml class App(BaseModel): @@ -33,7 +37,7 @@ class App(BaseModel): url_prefix: StrictStr maintenance_file: FilePath scheduled_maintenance_file: FilePath - use_sub_second_timestamps: StrictBool = False + use_sub_second_timestamps: bool = False # Cannot use StrictBool if loading from env class ImagesConfig(BaseModel): @@ -206,7 +210,7 @@ class BackupConfig(BaseModel): ) -class APIConfig(BaseModel): +class APIConfig(BaseSettings): """ Class to store the API's configuration settings """ @@ -227,21 +231,31 @@ class APIConfig(BaseModel): observability: ObservabilityConfig backup: BackupConfig | None = None - @classmethod - def load(cls, path=Path(__file__).parent.parent / "config.yml"): - """ - Load the config data from the .yml file and store it as a dict - """ + model_config = SettingsConfigDict( + yaml_file=Path(__file__).parent.parent / "config.yml", + env_nested_delimiter="__", + hide_input_in_errors=True, + ) - try: - with open(path, encoding="utf-8") as config_file: - config = yaml.safe_load(config_file) - return cls(**config) - except (IOError, ValidationError, yaml.YAMLError) as e: - sys.exit(f"An error occurred while loading the config data: {e}") + @classmethod + def settings_customise_sources( + cls, + settings_cls: Type[BaseSettings], + init_settings: PydanticBaseSettingsSource, + env_settings: PydanticBaseSettingsSource, + dotenv_settings: PydanticBaseSettingsSource, + file_secret_settings: PydanticBaseSettingsSource, + ) -> Tuple[PydanticBaseSettingsSource, ...]: + return ( + init_settings, + env_settings, + dotenv_settings, + YamlConfigSettingsSource(settings_cls), + file_secret_settings, + ) class Config: """Class containing config as a class variable so it can mocked during testing""" - config = APIConfig.load() + config = APIConfig() diff --git a/operationsgateway_api/src/records/ingestion/hdf_handler.py b/operationsgateway_api/src/records/ingestion/hdf_handler.py index 30976bd1..31c1b693 100644 --- a/operationsgateway_api/src/records/ingestion/hdf_handler.py +++ b/operationsgateway_api/src/records/ingestion/hdf_handler.py @@ -423,7 +423,7 @@ def _extract_string( return None, internal_failed_channel except ValidationError as exc: for error in exc.errors(): - if error["type"] == "int_type" or error["type"] == "float_type": + if error["type"] == "string_type": internal_failed_channel.append( {channel_name: "data has wrong datatype"}, ) diff --git a/poetry.lock b/poetry.lock index 9c68d0dd..c4b931dc 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 2.1.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.1.3 and should not be changed by hand. [[package]] name = "aioboto3" @@ -3487,6 +3487,30 @@ files = [ [package.dependencies] typing-extensions = ">=4.14.1" +[[package]] +name = "pydantic-settings" +version = "2.14.0" +description = "Settings management using Pydantic" +optional = false +python-versions = ">=3.10" +groups = ["main"] +files = [ + {file = "pydantic_settings-2.14.0-py3-none-any.whl", hash = "sha256:fc8d5d692eb7092e43c8647c1c35a3ecd00e040fcf02ed86f4cb5458ca62182e"}, + {file = "pydantic_settings-2.14.0.tar.gz", hash = "sha256:24285fd4b0e0c06507dd9fdfd331ee23794305352aaec8fc4eb92d4047aeb67d"}, +] + +[package.dependencies] +pydantic = ">=2.7.0" +python-dotenv = ">=0.21.0" +typing-inspection = ">=0.4.0" + +[package.extras] +aws-secrets-manager = ["boto3 (>=1.35.0)", "types-boto3[secretsmanager]"] +azure-key-vault = ["azure-identity (>=1.16.0)", "azure-keyvault-secrets (>=4.8.0)"] +gcp-secret-manager = ["google-cloud-secret-manager (>=2.23.1)"] +toml = ["tomli (>=2.0.1)"] +yaml = ["pyyaml (>=6.0.1)"] + [[package]] name = "pyflakes" version = "3.4.0" @@ -3762,6 +3786,25 @@ pytest = ">=4.6" [package.extras] testing = ["fields", "hunter", "process-tests", "pytest-xdist", "six", "virtualenv"] +[[package]] +name = "pytest-env" +version = "1.6.0" +description = "pytest plugin that allows you to add environment variables." +optional = false +python-versions = ">=3.10" +groups = ["dev"] +files = [ + {file = "pytest_env-1.6.0-py3-none-any.whl", hash = "sha256:1e7f8a62215e5885835daaed694de8657c908505b964ec8097a7ce77b403d9a3"}, + {file = "pytest_env-1.6.0.tar.gz", hash = "sha256:ac02d6fba16af54d61e311dd70a3c61024a4e966881ea844affc3c8f0bf207d3"}, +] + +[package.dependencies] +pytest = ">=9.0.2" +python-dotenv = ">=1.2.2" + +[package.extras] +testing = ["covdefaults (>=2.3)", "coverage (>=7.13.4)", "pytest-mock (>=3.15.1)"] + [[package]] name = "pytest-mock" version = "3.15.1" @@ -3795,6 +3838,21 @@ files = [ [package.dependencies] six = ">=1.5" +[[package]] +name = "python-dotenv" +version = "1.2.2" +description = "Read key-value pairs from a .env file and set them as environment variables" +optional = false +python-versions = ">=3.10" +groups = ["main", "dev"] +files = [ + {file = "python_dotenv-1.2.2-py3-none-any.whl", hash = "sha256:1d8214789a24de455a8b8bd8ae6fe3c6b69a5e3d64aa8a8e5d68e694bbcb285a"}, + {file = "python_dotenv-1.2.2.tar.gz", hash = "sha256:2c371a91fbd7ba082c2c1dc1f8bf89ca22564a087c2c287cd9b662adde799cf3"}, +] + +[package.extras] +cli = ["click (>=5.0)"] + [[package]] name = "python-ldap" version = "3.4.5" @@ -4927,4 +4985,4 @@ xmlsec = ["xmlsec (>=0.6.1)"] [metadata] lock-version = "2.1" python-versions = ">=3.11,<3.12" -content-hash = "e1c51b3dba8e88dc5afe313b995c9cd97176d86b099182599e526d0ef3559e56" +content-hash = "a20dd9a2ebc78e2caf02ca05e0708f277d4bfc700543a6c04bc38741311eec1b" diff --git a/pyproject.toml b/pyproject.toml index 299f21ce..ebe2eb91 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -51,6 +51,7 @@ Authlib = "^1.6.10" urllib3 = "^2.6.3" aiohttp = "^3.13.5" starlette = "^0.49.1" +pydantic-settings = "^2.14.0" [tool.poetry.group.dev.dependencies] black = "^26.3.1" @@ -72,6 +73,7 @@ fabric = "^3.1.0" pytest-asyncio = "^0.21.0" s4cmd = "^2.1.0" pytest-mock = "^3.14.1" +pytest-env = "^1.6.0" [tool.poetry.group.simulated-data.dependencies] epac-data-sim = {git = "git@github.com:CentralLaserFacility/EPAC-DataSim.git"} diff --git a/test/conftest.py b/test/conftest.py index 564baf4d..00b2d03c 100644 --- a/test/conftest.py +++ b/test/conftest.py @@ -1,20 +1,109 @@ +import asyncio import base64 import io import json import os from pathlib import Path +from typing import AsyncGenerator from unittest.mock import patch from fastapi.testclient import TestClient import imagehash -from PIL import Image +from PIL import Image as PILImage import pytest +import pytest_asyncio -from operationsgateway_api.src.config import BackupConfig -from operationsgateway_api.src.experiments.unique_worker import UniqueWorker +from operationsgateway_api.src.config import BackupConfig, Config from operationsgateway_api.src.main import app -from operationsgateway_api.src.records.echo_interface import get_echo_interface +from operationsgateway_api.src.mongo.interface import MongoDBInterface +from operationsgateway_api.src.records.echo_interface import ( + EchoInterface, + get_echo_interface, +) from operationsgateway_api.src.records.false_colour_handler import FalseColourHandler +from operationsgateway_api.src.records.float_image import FloatImage +from operationsgateway_api.src.records.image import Image +from operationsgateway_api.src.records.vector import Vector +from operationsgateway_api.src.records.waveform import Waveform +from util.realistic_data.ingest_echo_data import DataIngester + +MARK_EPAC_TEST = pytest.mark.skipif( + condition=Config.config.app.use_sub_second_timestamps, + reason="Skip EPAC style data", +) +MARK_GEMINI_TEST = pytest.mark.skipif( + condition=not Config.config.app.use_sub_second_timestamps, + reason="Skip Gemini style data", +) + + +def format_id(record_id: str) -> str: + """ + Format `record_id` appropriately based on + `Config.config.app.use_sub_second_timestamps`. + + Args: + record_id (str): Record id string including ms in the form "YYYYMMDDHHMMSSfff". + + Returns: + str: + Record id string possibly including ms in the form "YYYYMMDDHHMMSSfff" or + "YYYYMMDDHHMMSS". + """ + if Config.config.app.use_sub_second_timestamps: + return record_id + else: + return record_id[:14] + + +def format_datetime_str(datetime_str: str) -> str: + """ + Format `datetime_str` appropriately based on + `Config.config.app.use_sub_second_timestamps`. + + Args: + datetime_str (str): + Datetime string including ms in the form "YYYY-MM-DDTHH:MM:SS.ffffff". + + Returns: + str: + Datetime string possibly including ms in the form + "YYYY-MM-DDTHH:MM:SS.ffffff" or "YYYY-MM-DDTHH:MM:SS". + """ + if Config.config.app.use_sub_second_timestamps: + return datetime_str + else: + return datetime_str.split(".")[0] + + +RECORD_ID_TMP = format_id("20200407142816000") +RECORD_ID_05_0800 = format_id("20230605080000123") +RECORD_ID_05_0803 = format_id("20230605080300234") +RECORD_ID_05_1700 = format_id("20230605170000345") +RECORD_ID_06_1200 = format_id("20230606120000456") +DATETIME_STR_05_0800 = format_datetime_str("2023-06-05T08:00:00.123000") +DATETIME_STR_05_0803 = format_datetime_str("2023-06-05T08:03:00.234000") +DATETIME_STR_05_1700 = format_datetime_str("2023-06-05T17:00:00.345000") +DATETIME_STR_06_1200 = format_datetime_str("2023-06-06T12:00:00.456000") + + +@pytest.fixture(scope="session") +def event_loop(): + loop = asyncio.get_event_loop() + yield loop + loop.close() + + +@pytest_asyncio.fixture(scope="session", autouse=True) +async def ingest() -> AsyncGenerator[None, None]: + record = await MongoDBInterface.find_one(collection_name="records") + if record is None: + data_ingester = DataIngester() + data_ingester.main() + + yield + + # Session tear down code could go here, if needed @pytest.fixture(scope="function") @@ -86,6 +175,29 @@ def remove_background_pid_file(): pass +async def remove_record(timestamp_id): + await MongoDBInterface.delete_one( + "records", + filter_={"_id": f"{timestamp_id}"}, + ) + + +@pytest_asyncio.fixture(scope="function") +async def reset_record_storage(): + yield + await remove_record(RECORD_ID_TMP) + await MongoDBInterface.delete_one("records", {"metadata.shotnum": 366272}) + echo = EchoInterface() + subdirectories = echo.format_record_id(RECORD_ID_TMP) + await echo.delete_directory(f"{Waveform.echo_prefix}/{subdirectories}/") + await echo.delete_directory(f"{Image.echo_prefix}/{subdirectories}/") + await echo.delete_directory(f"{FloatImage.echo_prefix}/{subdirectories}/") + await echo.delete_directory(f"{Vector.echo_prefix}/{subdirectories}/") + + if os.path.exists("test.h5"): + os.remove("test.h5") + + def assert_record(record, expected_channel_count, expected_channel_data): assert list(record.keys()) == ["_id", "metadata", "channels"] assert len(record["channels"]) == expected_channel_count @@ -100,7 +212,7 @@ def assert_record(record, expected_channel_count, expected_channel_data): assert value["data"] == expected_channel_data[channel_name] else: image_bytes = base64.b64decode(value["thumbnail"]) - image = Image.open(io.BytesIO(image_bytes)) + image = PILImage.open(io.BytesIO(image_bytes)) image_phash = str(imagehash.phash(image)) assert image_phash == expected_channel_data[channel_name] @@ -121,7 +233,7 @@ def assert_thumbnails(record: dict, expected_thumbnails_hashes: dict): num_channels_found += 1 b64_thumbnail_string = value["thumbnail"] thumbnail_bytes = base64.b64decode(b64_thumbnail_string) - img = Image.open(io.BytesIO(thumbnail_bytes)) + img = PILImage.open(io.BytesIO(thumbnail_bytes)) thumbnail_phash = str(imagehash.phash(img)) assert thumbnail_phash == expected_thumbnails_hashes[channel_name] assert num_channels_found == len(expected_thumbnails_hashes.keys()) diff --git a/test/endpoints/conftest.py b/test/endpoints/conftest.py index bc80d62f..c119f3cc 100644 --- a/test/endpoints/conftest.py +++ b/test/endpoints/conftest.py @@ -14,6 +14,7 @@ from operationsgateway_api.src.records.record import Record from operationsgateway_api.src.records.vector import Vector from operationsgateway_api.src.records.waveform import Waveform +from test.conftest import RECORD_ID_TMP async def add_user(auth_type): @@ -70,30 +71,6 @@ async def delete_local_fixture(): await remove_user("local") -async def remove_record(timestamp_id): - await MongoDBInterface.delete_one( - "records", - filter_={"_id": f"{timestamp_id}"}, - ) - - -@pytest_asyncio.fixture(scope="function") -async def reset_record_storage(): - yield - record_id = "20200407142816" - await remove_record(record_id) - await MongoDBInterface.delete_one("records", {"metadata.shotnum": 366272}) - echo = EchoInterface() - subdirectories = echo.format_record_id(record_id) - await echo.delete_directory(f"{Waveform.echo_prefix}/{subdirectories}/") - await echo.delete_directory(f"{Image.echo_prefix}/{subdirectories}/") - await echo.delete_directory(f"{FloatImage.echo_prefix}/{subdirectories}/") - await echo.delete_directory(f"{Vector.echo_prefix}/{subdirectories}/") - - if os.path.exists("test.h5"): - os.remove("test.h5") - - @pytest_asyncio.fixture(scope="function") async def remove_manifest_fixture(): yield diff --git a/test/endpoints/test_channel_summary.py b/test/endpoints/test_channel_summary.py index 3caec5a2..8f568cd9 100644 --- a/test/endpoints/test_channel_summary.py +++ b/test/endpoints/test_channel_summary.py @@ -7,6 +7,10 @@ import pytest from test.conftest import ( + DATETIME_STR_05_0800, + DATETIME_STR_05_0803, + DATETIME_STR_05_1700, + DATETIME_STR_06_1200, set_preferred_colourmap, set_preferred_float_colourmap, unset_preferred_colourmap, @@ -21,12 +25,12 @@ class TestChannelSummary: pytest.param( "SER-202-BI-RH-1", { - "first_date": "2023-06-04T00:00:00", - "most_recent_date": "2023-06-06T12:00:00", + "first_date": DATETIME_STR_05_0800, + "most_recent_date": DATETIME_STR_06_1200, "recent_sample": [ - {"2023-06-06T12:00:00": 48.761769913881054}, - {"2023-06-05T23:54:00": 45.105075954471815}, - {"2023-06-05T23:48:00": 42.7879518924901}, + {DATETIME_STR_06_1200: 48.761769913881054}, + {DATETIME_STR_05_1700: 44.550989418488655}, + {DATETIME_STR_05_0803: 40.81474627800218}, ], }, id="Scalar channel (number) summary", @@ -54,12 +58,12 @@ def test_valid_scalar_channel_summary( pytest.param( "FE-204-PSO-P2-CAM-2", { - "first_date": "2023-06-05T08:00:00", - "most_recent_date": "2023-06-06T12:00:00", + "first_date": DATETIME_STR_05_0800, + "most_recent_date": DATETIME_STR_06_1200, "recent_sample": [ - {"2023-06-06T12:00:00": "c63939c6c63139c7"}, - {"2023-06-05T16:00:00": "c63939c63939c639"}, - {"2023-06-05T15:00:00": "ce3131cece3131ce"}, + {DATETIME_STR_06_1200: "c63939c6c63139c7"}, + {DATETIME_STR_05_0803: "c73838c7c738c6c6"}, + {DATETIME_STR_05_0800: "cc3333ccc333cccc"}, ], }, False, @@ -70,12 +74,12 @@ def test_valid_scalar_channel_summary( pytest.param( "FE-204-PSO-P2-CAM-2", { - "first_date": "2023-06-05T08:00:00", - "most_recent_date": "2023-06-06T12:00:00", + "first_date": DATETIME_STR_05_0800, + "most_recent_date": DATETIME_STR_06_1200, "recent_sample": [ - {"2023-06-06T12:00:00": "c63939c6c63939c6"}, - {"2023-06-05T16:00:00": "c63939c63939c639"}, - {"2023-06-05T15:00:00": "ce3131cece3131ce"}, + {DATETIME_STR_06_1200: "c63939c6c63939c6"}, + {DATETIME_STR_05_0803: "c73838c6c43ff838"}, + {DATETIME_STR_05_0800: "cc3333cccc33cccc"}, ], }, True, @@ -84,11 +88,9 @@ def test_valid_scalar_channel_summary( pytest.param( "FE-204-NSS-WFS", { - "first_date": "2023-06-05T08:03:00", - "most_recent_date": "2023-06-05T08:03:00", - "recent_sample": [ - {"2023-06-05T08:03:00": "93cf6c1833976165"}, - ], + "first_date": DATETIME_STR_05_0803, + "most_recent_date": DATETIME_STR_05_0803, + "recent_sample": [{DATETIME_STR_05_0803: "93cf6c1833976165"}], }, False, id="Float image channel summary (using system default colourmap)", @@ -96,11 +98,9 @@ def test_valid_scalar_channel_summary( pytest.param( "FE-204-NSS-WFS", { - "first_date": "2023-06-05T08:03:00", - "most_recent_date": "2023-06-05T08:03:00", - "recent_sample": [ - {"2023-06-05T08:03:00": "ec3893c79c688f92"}, - ], + "first_date": DATETIME_STR_05_0803, + "most_recent_date": DATETIME_STR_05_0803, + "recent_sample": [{DATETIME_STR_05_0803: "ec3893c79c688f92"}], }, True, id="Float image channel summary (using user's preferred colourmap)", @@ -108,11 +108,9 @@ def test_valid_scalar_channel_summary( pytest.param( "FE-204-NSS-WFS-COEF", { - "first_date": "2023-06-05T08:03:00", - "most_recent_date": "2023-06-05T08:03:00", - "recent_sample": [ - {"2023-06-05T08:03:00": "83c0e03ef8c77f30"}, - ], + "first_date": DATETIME_STR_05_0803, + "most_recent_date": DATETIME_STR_05_0803, + "recent_sample": [{DATETIME_STR_05_0803: "83c0e03ef8c77f30"}], }, False, id="Vector channel summary", @@ -120,12 +118,12 @@ def test_valid_scalar_channel_summary( pytest.param( "FE-204-PSO-P1-PD", { - "first_date": "2023-06-05T08:00:00", - "most_recent_date": "2023-06-06T12:00:00", + "first_date": DATETIME_STR_05_0800, + "most_recent_date": DATETIME_STR_06_1200, "recent_sample": [ - {"2023-06-06T12:00:00": "e6e619e419e59859"}, - {"2023-06-05T16:00:00": "e6e41be41be19a19"}, - {"2023-06-05T15:00:00": "e6e61be41ae11a39"}, + {DATETIME_STR_06_1200: "e6e619e419e59859"}, + {DATETIME_STR_05_0803: "e6e619e419e59859"}, + {DATETIME_STR_05_0800: "e6e41be41be51a19"}, ], }, False, diff --git a/test/endpoints/test_count_records.py b/test/endpoints/test_count_records.py index cd48e45d..c13ca9ec 100644 --- a/test/endpoints/test_count_records.py +++ b/test/endpoints/test_count_records.py @@ -3,6 +3,8 @@ from fastapi.testclient import TestClient import pytest +from test.conftest import MARK_EPAC_TEST, MARK_GEMINI_TEST + class TestCountRecords: @pytest.mark.parametrize( @@ -10,18 +12,38 @@ class TestCountRecords: [ pytest.param( {}, - 401, + 4, id="No conditions", ), pytest.param( {"metadata.shotnum": 423648000000}, 1, - id="Specific shot number", + marks=MARK_EPAC_TEST, + id="EPAC: Specific shot number", ), pytest.param( {"metadata.shotnum": {"$gt": 423648072000}}, - 7, - id="Shot number range with operator", + 1, + marks=MARK_EPAC_TEST, + id="EPAC: Shot number range with operator", + ), + pytest.param( + { + "metadata.shotnum": "20230605-075959", + "metadata.active_area": {"$in": ["GD"]}, + }, + 1, + marks=MARK_GEMINI_TEST, + id="Gemini: Specific shot number", + ), + pytest.param( + { + "metadata.shotnum": {"$gt": "20230605-120000"}, + "metadata.active_area": {"$in": ["GD"]}, + }, + 1, + marks=MARK_GEMINI_TEST, + id="Gemini: Shot number range with operator", ), ], ) diff --git a/test/endpoints/test_export.py b/test/endpoints/test_export.py index d4a0ab7b..4d2feda5 100644 --- a/test/endpoints/test_export.py +++ b/test/endpoints/test_export.py @@ -12,7 +12,14 @@ import pytest from operationsgateway_api.src.exceptions import EchoS3Error -from test.conftest import assert_text_file_contents +from test.conftest import ( + assert_text_file_contents, + MARK_EPAC_TEST, + MARK_GEMINI_TEST, + RECORD_ID_05_0800, + RECORD_ID_05_0803, + RECORD_ID_05_1700, +) class TestExport: @@ -40,17 +47,7 @@ class TestExport: ], [ pytest.param( - { - "_id": { - "$in": [ - "20230605080000", - "20230605090000", - "20230605100000", - "20230605110000", - "20230605120000", - ], - }, - }, + {"_id": {"$in": [RECORD_ID_05_0800, RECORD_ID_05_0803]}}, 0, 10, "metadata.shotnum ASC", @@ -74,23 +71,13 @@ class TestExport: None, None, [], # functions - "20230605080000_to_20230605120000.csv", - "export/20230605080000_to_20230605120000_asc.csv", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv", + f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv", None, id="Basic CSV export of different channel types", ), pytest.param( - { - "_id": { - "$in": [ - "20230605080000", - "20230605090000", - "20230605100000", - "20230605110000", - "20230605120000", - ], - }, - }, + {"_id": {"$in": [RECORD_ID_05_0800, RECORD_ID_05_0803]}}, 0, 10, "metadata.shotnum DESC", @@ -111,23 +98,13 @@ class TestExport: None, None, [], # functions - "20230605080000_to_20230605120000.csv", - "export/20230605080000_to_20230605120000_desc.csv", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv", + f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}_desc.csv", None, id="Basic CSV export in descending shotnum order", ), pytest.param( - { - "_id": { - "$in": [ - "20230605080000", - "20230605090000", - "20230605100000", - "20230605110000", - "20230605120000", - ], - }, - }, + {"_id": {"$in": [RECORD_ID_05_0800, RECORD_ID_05_0803]}}, 1, 2, "metadata.shotnum DESC", @@ -148,23 +125,13 @@ class TestExport: None, None, [], # functions - "20230605100000_to_20230605110000.csv", - "export/20230605100000_to_20230605110000_desc_s_l.csv", + f"{RECORD_ID_05_0800}.csv", + f"export/{RECORD_ID_05_0800}.csv", None, id="Basic CSV export with skip and limit set", ), pytest.param( - { - "_id": { - "$in": [ - "20230605080000", - "20230605090000", - "20230605100000", - "20230605110000", - "20230605120000", - ], - }, - }, + {"_id": {"$in": [RECORD_ID_05_0800, RECORD_ID_05_0803]}}, 0, 10, "metadata.shotnum ASC", @@ -186,16 +153,14 @@ class TestExport: None, None, [], # functions - "20230605080000_to_20230605120000.zip", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.zip", None, { - "20230605080000_to_20230605120000.csv": "export/" - "20230605080000_to_20230605120000_asc.csv", - "20230605080000_FE-204-PSO-CAM-1.png": "da2d4927045f24bf", - "20230605090000_FE-204-PSO-CAM-1.png": "c8270437263f26bf", - "20230605100000_FE-204-PSO-CAM-1.png": "c8262437273b373d", - "20230605110000_FE-204-PSO-CAM-1.png": "da6d49270437247f", - "20230605120000_FE-204-PSO-CAM-1.png": "dad7495b04ab04fa", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv": ( + f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv" + ), + f"{RECORD_ID_05_0800}_FE-204-PSO-CAM-1.png": "da2d4927045f24bf", + f"{RECORD_ID_05_0803}_FE-204-PSO-CAM-1.png": "d5b55a554aaa4a55", }, id="Zip export of main CSV and images", ), @@ -205,7 +170,7 @@ class TestExport: { "metadata.timestamp": { "$gt": "2023-06-05T07:00:00", - "$lt": "2023-06-05T13:00:00", + "$lt": "2023-06-05T18:00:00", }, }, ], @@ -230,23 +195,13 @@ class TestExport: None, None, [], # functions - "20230605070600_to_20230605120000.csv", - "export/20230605070600_to_20230605120000.csv", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_1700}.csv", + f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_1700}.csv", None, id="Basic CSV export of sparse data (some values missing)", ), pytest.param( - { - "_id": { - "$in": [ - "20230605080000", - "20230605090000", - "20230605100000", - "20230605110000", - "20230605120000", - ], - }, - }, + {"_id": {"$in": [RECORD_ID_05_0800, RECORD_ID_05_0803]}}, 0, 10, "metadata.shotnum ASC", @@ -268,31 +223,19 @@ class TestExport: 15, "jet_r", [], # functions - "20230605080000_to_20230605120000.zip", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.zip", None, { - "20230605080000_to_20230605120000.csv": "export/" - "20230605080000_to_20230605120000_asc.csv", - "20230605080000_FE-204-PSO-CAM-1.png": "c73838c6c637c738", - "20230605090000_FE-204-PSO-CAM-1.png": "c73838c7c73838c7", - "20230605100000_FE-204-PSO-CAM-1.png": "c73838c7c73838c7", - "20230605110000_FE-204-PSO-CAM-1.png": "c73938c7c427c738", - "20230605120000_FE-204-PSO-CAM-1.png": "c4c43f273838c6fc", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv": ( + f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv" + ), + f"{RECORD_ID_05_0800}_FE-204-PSO-CAM-1.png": "c73838c6c637c738", + f"{RECORD_ID_05_0803}_FE-204-PSO-CAM-1.png": "b624db22fb26d903", }, id="Zip export of main CSV with images in false colour", ), pytest.param( - { - "_id": { - "$in": [ - "20230605080000", - "20230605090000", - "20230605100000", - "20230605110000", - "20230605120000", - ], - }, - }, + {"_id": {"$in": [RECORD_ID_05_0800, RECORD_ID_05_0803]}}, 0, 10, "metadata.shotnum ASC", @@ -316,41 +259,25 @@ class TestExport: None, None, [], # functions - "20230605080000_to_20230605120000.zip", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.zip", None, { - "20230605080000_to_20230605120000.csv": "export/" - "20230605080000_to_20230605120000_asc.csv", - "20230605080000_FE-204-PSO-CAM-1.png": "da2d4927045f24bf", - "20230605090000_FE-204-PSO-CAM-1.png": "c8270437263f26bf", - "20230605100000_FE-204-PSO-CAM-1.png": "c8262437273b373d", - "20230605110000_FE-204-PSO-CAM-1.png": "da6d49270437247f", - "20230605120000_FE-204-PSO-CAM-1.png": "dad7495b04ab04fa", - "20230605080000_FE-204-PSO-P1-SP.csv": "export/" - "20230605080000_FE-204-PSO-P1-SP.csv", - "20230605090000_FE-204-PSO-P1-SP.csv": "export/" - "20230605090000_FE-204-PSO-P1-SP.csv", - "20230605100000_FE-204-PSO-P1-SP.csv": "export/" - "20230605100000_FE-204-PSO-P1-SP.csv", - "20230605110000_FE-204-PSO-P1-SP.csv": "export/" - "20230605110000_FE-204-PSO-P1-SP.csv", - "20230605120000_FE-204-PSO-P1-SP.csv": "export/" - "20230605120000_FE-204-PSO-P1-SP.csv", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv": ( + f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv" + ), + f"{RECORD_ID_05_0800}_FE-204-PSO-CAM-1.png": "da2d4927045f24bf", + f"{RECORD_ID_05_0800}_FE-204-PSO-P1-SP.csv": ( + "export/20230605080000_FE-204-PSO-P1-SP.csv" + ), + f"{RECORD_ID_05_0803}_FE-204-PSO-CAM-1.png": "d5b55a554aaa4a55", + f"{RECORD_ID_05_0803}_FE-204-PSO-P1-SP.csv": ( + "export/20230605080300_FE-204-PSO-P1-SP.csv" + ), }, id="Zip export of main CSV, images & waveform CSVs", ), pytest.param( - { - "_id": { - "$in": [ - "20230605080000", - "20230605090000", - "20230605100000", - "20230605110000", - "20230605120000", - ], - }, - }, + {"_id": {"$in": [RECORD_ID_05_0800, RECORD_ID_05_0803]}}, 0, 10, "metadata.shotnum ASC", @@ -375,46 +302,27 @@ class TestExport: None, None, [], # functions - "20230605080000_to_20230605120000.zip", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.zip", None, { - "20230605080000_to_20230605120000.csv": "export/" - "20230605080000_to_20230605120000_asc.csv", - "20230605080000_FE-204-PSO-CAM-1.png": "da2d4927045f24bf", - "20230605090000_FE-204-PSO-CAM-1.png": "c8270437263f26bf", - "20230605100000_FE-204-PSO-CAM-1.png": "c8262437273b373d", - "20230605110000_FE-204-PSO-CAM-1.png": "da6d49270437247f", - "20230605120000_FE-204-PSO-CAM-1.png": "dad7495b04ab04fa", - "20230605080000_FE-204-PSO-P1-SP.csv": "export/" - "20230605080000_FE-204-PSO-P1-SP.csv", - "20230605090000_FE-204-PSO-P1-SP.csv": "export/" - "20230605090000_FE-204-PSO-P1-SP.csv", - "20230605100000_FE-204-PSO-P1-SP.csv": "export/" - "20230605100000_FE-204-PSO-P1-SP.csv", - "20230605110000_FE-204-PSO-P1-SP.csv": "export/" - "20230605110000_FE-204-PSO-P1-SP.csv", - "20230605120000_FE-204-PSO-P1-SP.csv": "export/" - "20230605120000_FE-204-PSO-P1-SP.csv", - "20230605080000_FE-204-PSO-P1-SP.png": "fa914e6e914eb04d", - "20230605090000_FE-204-PSO-P1-SP.png": "fa916e6e916e9181", - "20230605100000_FE-204-PSO-P1-SP.png": "fab14f6e914e90c1", - "20230605110000_FE-204-PSO-P1-SP.png": "fb914e6e914eb091", - "20230605120000_FE-204-PSO-P1-SP.png": "ff914e6e914eb081", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv": ( + f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv" + ), + f"{RECORD_ID_05_0800}_FE-204-PSO-CAM-1.png": "da2d4927045f24bf", + f"{RECORD_ID_05_0800}_FE-204-PSO-P1-SP.csv": ( + "export/20230605080000_FE-204-PSO-P1-SP.csv" + ), + f"{RECORD_ID_05_0800}_FE-204-PSO-P1-SP.png": "fa914e6e914eb04d", + f"{RECORD_ID_05_0803}_FE-204-PSO-CAM-1.png": "d5b55a554aaa4a55", + f"{RECORD_ID_05_0803}_FE-204-PSO-P1-SP.csv": ( + "export/20230605080300_FE-204-PSO-P1-SP.csv" + ), + f"{RECORD_ID_05_0803}_FE-204-PSO-P1-SP.png": "fa916e6e916e9181", }, id="Zip export of main CSV, images, waveform CSVs and waveform images", ), pytest.param( - { - "_id": { - "$in": [ - "20230605080000", - "20230605090000", - "20230605100000", - "20230605110000", - "20230605120000", - ], - }, - }, + {"_id": {"$in": [RECORD_ID_05_0800, RECORD_ID_05_0803]}}, 0, 10, "metadata.shotnum ASC", @@ -437,36 +345,23 @@ class TestExport: None, None, [], # functions - "20230605080000_to_20230605120000.zip", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.zip", None, { - "20230605080000_to_20230605120000.csv": "export/" - "20230605080000_to_20230605120000_asc.csv", - "20230605080000_FE-204-PSO-P1-SP.csv": "export/" - "20230605080000_FE-204-PSO-P1-SP.csv", - "20230605090000_FE-204-PSO-P1-SP.csv": "export/" - "20230605090000_FE-204-PSO-P1-SP.csv", - "20230605100000_FE-204-PSO-P1-SP.csv": "export/" - "20230605100000_FE-204-PSO-P1-SP.csv", - "20230605110000_FE-204-PSO-P1-SP.csv": "export/" - "20230605110000_FE-204-PSO-P1-SP.csv", - "20230605120000_FE-204-PSO-P1-SP.csv": "export/" - "20230605120000_FE-204-PSO-P1-SP.csv", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv": ( + f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv" + ), + f"{RECORD_ID_05_0800}_FE-204-PSO-P1-SP.csv": ( + "export/20230605080000_FE-204-PSO-P1-SP.csv" + ), + f"{RECORD_ID_05_0803}_FE-204-PSO-P1-SP.csv": ( + "export/20230605080300_FE-204-PSO-P1-SP.csv" + ), }, id="Zip export of main CSV and waveform CSVs but no images", ), pytest.param( - { - "_id": { - "$in": [ - "20230605080000", - "20230605090000", - "20230605100000", - "20230605110000", - "20230605120000", - ], - }, - }, + {"_id": {"$in": [RECORD_ID_05_0800, RECORD_ID_05_0803]}}, 0, 10, "metadata.shotnum ASC", @@ -488,29 +383,16 @@ class TestExport: None, None, [], # functions - "20230605080000_to_20230605120000.zip", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.zip", None, { - "20230605080000_FE-204-PSO-CAM-1.png": "da2d4927045f24bf", - "20230605090000_FE-204-PSO-CAM-1.png": "c8270437263f26bf", - "20230605100000_FE-204-PSO-CAM-1.png": "c8262437273b373d", - "20230605110000_FE-204-PSO-CAM-1.png": "da6d49270437247f", - "20230605120000_FE-204-PSO-CAM-1.png": "dad7495b04ab04fa", + f"{RECORD_ID_05_0800}_FE-204-PSO-CAM-1.png": "da2d4927045f24bf", + f"{RECORD_ID_05_0803}_FE-204-PSO-CAM-1.png": "d5b55a554aaa4a55", }, id="Zip export without main CSV so just images", ), pytest.param( - { - "_id": { - "$in": [ - "20230605080000", - "20230605090000", - "20230605100000", - "20230605110000", - "20230605120000", - ], - }, - }, + {"_id": {"$in": [RECORD_ID_05_0800, RECORD_ID_05_0803]}}, 0, 10, "metadata.shotnum ASC", @@ -533,21 +415,19 @@ class TestExport: None, None, [], # functions - "20230605080000_to_20230605120000.zip", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.zip", None, { - "20230605080000_to_20230605120000.csv": "export/" - "20230605080000_to_20230605120000_asc.csv", - "20230605080000_FE-204-PSO-CAM-1.png": "da2d4927045f24bf", - "20230605090000_FE-204-PSO-CAM-1.png": "c8270437263f26bf", - "20230605100000_FE-204-PSO-CAM-1.png": "c8262437273b373d", - "20230605110000_FE-204-PSO-CAM-1.png": "da6d49270437247f", - "20230605120000_FE-204-PSO-CAM-1.png": "dad7495b04ab04fa", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv": ( + f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv" + ), + f"{RECORD_ID_05_0800}_FE-204-PSO-CAM-1.png": "da2d4927045f24bf", + f"{RECORD_ID_05_0803}_FE-204-PSO-CAM-1.png": "d5b55a554aaa4a55", }, id="Zip export of main CSV and images but no waveform CSVs", ), pytest.param( - {"_id": {"$in": ["20230605080300"]}}, + {"_id": {"$in": [RECORD_ID_05_0803]}}, 0, 10, "metadata.shotnum ASC", @@ -570,20 +450,20 @@ class TestExport: None, None, [], # functions - "20230605080300.zip", + f"{RECORD_ID_05_0803}.zip", None, { - "20230605080300.csv": "export/20230605080300_asc.csv", - "20230605080300_FE-204-NSS-WFS.npz": (500, 680), - "20230605080300_FE-204-NSS-WFS-COEF.csv": ( + f"{RECORD_ID_05_0803}.csv": f"export/{RECORD_ID_05_0803}.csv", + f"{RECORD_ID_05_0803}_FE-204-NSS-WFS.npz": (500, 680), + f"{RECORD_ID_05_0803}_FE-204-NSS-WFS-COEF.csv": ( "export/20230605080300_FE-204-NSS-WFS-COEF.csv" ), - "20230605080300_FE-204-NSS-WFS-COEF.png": "9f87e03838c77c38", + f"{RECORD_ID_05_0803}_FE-204-NSS-WFS-COEF.png": "9f87e03838c77c38", }, id="Zip export of vector CSV/image and float images", ), pytest.param( - {"_id": {"$in": ["20230605080300"]}}, + {"_id": {"$in": [RECORD_ID_05_0803]}}, 0, 10, "metadata.shotnum ASC", @@ -605,19 +485,21 @@ class TestExport: None, None, [], # functions - "20230605080300.zip", + f"{RECORD_ID_05_0803}.zip", None, { - "20230605080300.csv": "export/20230605080300_no_channels.csv", - "20230605080300_FE-204-LT-WFS-COEF.csv": ( + f"{RECORD_ID_05_0803}.csv": ( + f"export/{RECORD_ID_05_0803}_no_channels.csv" + ), + f"{RECORD_ID_05_0803}_FE-204-LT-WFS-COEF.csv": ( "export/20230605080300_FE-204-LT-WFS-COEF.csv" ), - "20230605080300_FE-204-LT-WFS-COEF.png": "9fc7c080719fcf60", + f"{RECORD_ID_05_0803}_FE-204-LT-WFS-COEF.png": "9fc7c080719fcf60", }, id="Zip export of vector CSV/image with labels", ), pytest.param( - {"_id": {"$in": ["20230605080000"]}}, + {"_id": {"$in": [RECORD_ID_05_0800]}}, 0, 10, "metadata.shotnum ASC", @@ -638,13 +520,13 @@ class TestExport: None, None, [], # functions - "20230605080000.csv", - "export/20230605080000.csv", + f"{RECORD_ID_05_0800}.csv", + f"export/{RECORD_ID_05_0800}.csv", None, id="CSV export of single record to test filename", ), pytest.param( - {"_id": {"$in": ["20230605080000"]}}, + {"_id": {"$in": [RECORD_ID_05_0800]}}, None, None, None, @@ -666,26 +548,16 @@ class TestExport: None, None, [], # functions - "20230605080000.zip", + f"{RECORD_ID_05_0800}.zip", None, { - "20230605080000.csv": "export/20230605080000.csv", - "20230605080000_FE-204-PSO-CAM-1.png": "da2d4927045f24bf", + f"{RECORD_ID_05_0800}.csv": f"export/{RECORD_ID_05_0800}.csv", + f"{RECORD_ID_05_0800}_FE-204-PSO-CAM-1.png": "da2d4927045f24bf", }, id="Zip export of single record to test filename", ), pytest.param( - { - "_id": { - "$in": [ - "20230605080000", - "20230605090000", - "20230605100000", - "20230605110000", - "20230605120000", - ], - }, - }, + {"_id": {"$in": [RECORD_ID_05_0800, RECORD_ID_05_0803]}}, 0, 10, "metadata.shotnum ASC", @@ -701,13 +573,13 @@ class TestExport: None, None, [], # functions - "20230605080000_to_20230605120000_FE-204-PSO-EM.csv", - "export/20230605080000_to_20230605120000_FE-204-PSO-EM.csv", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}_FE-204-PSO-EM.csv", + f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}_FE-204-PSO-EM.csv", None, id="CSV export of single channel to test filename", ), pytest.param( - {"_id": {"$in": ["20230605080000"]}}, + {"_id": {"$in": [RECORD_ID_05_0800]}}, None, None, None, @@ -723,25 +595,15 @@ class TestExport: None, None, [], # functions - "20230605080000_FE-204-PSO-CAM-1.zip", + f"{RECORD_ID_05_0800}_FE-204-PSO-CAM-1.zip", None, { - "20230605080000_FE-204-PSO-CAM-1.png": "da2d4927045f24bf", + f"{RECORD_ID_05_0800}_FE-204-PSO-CAM-1.png": "da2d4927045f24bf", }, id="Zip export of single channel to test filename", ), pytest.param( - { - "_id": { - "$in": [ - "20230605080000", - "20230605090000", - "20230605100000", - "20230605110000", - "20230605120000", - ], - }, - }, + {"_id": {"$in": [RECORD_ID_05_0800, RECORD_ID_05_0803]}}, 0, 10, "metadata.shotnum ASC", @@ -757,23 +619,13 @@ class TestExport: None, None, [], # functions - "20230605080000_to_20230605120000_ID.csv", - "export/20230605080000_to_20230605120000_ID.csv", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}_ID.csv", + f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}_ID.csv", None, id="CSV export of _id channel to test filename", ), pytest.param( - { - "_id": { - "$in": [ - "20230605080000", - "20230605090000", - "20230605100000", - "20230605110000", - "20230605120000", - ], - }, - }, + {"_id": {"$in": [RECORD_ID_05_0800, RECORD_ID_05_0803]}}, 0, 10, "metadata.shotnum ASC", @@ -796,23 +648,13 @@ class TestExport: None, None, [], # functions - "20230605080000_to_20230605120000.csv", - "export/20230605080000_to_20230605120000_asc_incl_id.csv", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv", + f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}_incl_id.csv", None, id="Basic CSV export of different channel types incl. _id channel", ), pytest.param( - { - "_id": { - "$in": [ - "20230605080000", - "20230605090000", - "20230605100000", - "20230605110000", - "20230605120000", - ], - }, - }, + {"_id": {"$in": [RECORD_ID_05_0800, RECORD_ID_05_0803]}}, 0, 10, "metadata.shotnum ASC", @@ -841,31 +683,22 @@ class TestExport: {"name": "waveform", "expression": "FE-204-PSO-P1-SP + (1 - 1)"}, {"name": "image", "expression": "FE-204-PSO-CAM-1 + (1 - 1)"}, ], - "20230605080000_to_20230605120000.zip", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.zip", None, { - "20230605080000_to_20230605120000.csv": "export/" - "20230605080000_to_20230605120000_asc.csv", - "20230605080000_FE-204-PSO-CAM-1.png": "da2d4927045f24bf", - "20230605090000_FE-204-PSO-CAM-1.png": "c8270437263f26bf", - "20230605100000_FE-204-PSO-CAM-1.png": "c8262437273b373d", - "20230605110000_FE-204-PSO-CAM-1.png": "da6d49270437247f", - "20230605120000_FE-204-PSO-CAM-1.png": "dad7495b04ab04fa", - "20230605080000_FE-204-PSO-P1-SP.csv": "export/" - "20230605080000_FE-204-PSO-P1-SP.csv", - "20230605090000_FE-204-PSO-P1-SP.csv": "export/" - "20230605090000_FE-204-PSO-P1-SP.csv", - "20230605100000_FE-204-PSO-P1-SP.csv": "export/" - "20230605100000_FE-204-PSO-P1-SP.csv", - "20230605110000_FE-204-PSO-P1-SP.csv": "export/" - "20230605110000_FE-204-PSO-P1-SP.csv", - "20230605120000_FE-204-PSO-P1-SP.csv": "export/" - "20230605120000_FE-204-PSO-P1-SP.csv", - "20230605080000_FE-204-PSO-P1-SP.png": "fa914e6e914eb04d", - "20230605090000_FE-204-PSO-P1-SP.png": "fa916e6e916e9181", - "20230605100000_FE-204-PSO-P1-SP.png": "fab14f6e914e90c1", - "20230605110000_FE-204-PSO-P1-SP.png": "fb914e6e914eb091", - "20230605120000_FE-204-PSO-P1-SP.png": "ff914e6e914eb081", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv": ( + f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv" + ), + f"{RECORD_ID_05_0800}_FE-204-PSO-CAM-1.png": "da2d4927045f24bf", + f"{RECORD_ID_05_0800}_FE-204-PSO-P1-SP.csv": ( + "export/20230605080000_FE-204-PSO-P1-SP.csv" + ), + f"{RECORD_ID_05_0800}_FE-204-PSO-P1-SP.png": "fa914e6e914eb04d", + f"{RECORD_ID_05_0803}_FE-204-PSO-CAM-1.png": "d5b55a554aaa4a55", + f"{RECORD_ID_05_0803}_FE-204-PSO-P1-SP.csv": ( + "export/20230605080300_FE-204-PSO-P1-SP.csv" + ), + f"{RECORD_ID_05_0803}_FE-204-PSO-P1-SP.png": "fa916e6e916e9181", }, id=( "Zip export of main CSV, images, waveform CSVs and waveform images " @@ -873,17 +706,7 @@ class TestExport: ), ), pytest.param( - { - "_id": { - "$in": [ - "20230605080000", - "20230605090000", - "20230605100000", - "20230605110000", - "20230605120000", - ], - }, - }, + {"_id": {"$in": [RECORD_ID_05_0800, RECORD_ID_05_0803]}}, 0, 10, "metadata.shotnum ASC", @@ -911,31 +734,22 @@ class TestExport: {"name": "waveform", "expression": "FE-204-PSO-P1-SP + (1 - 1)"}, {"name": "image", "expression": "FE-204-PSO-CAM-1 + (1 - 1)"}, ], - "20230605080000_to_20230605120000.zip", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.zip", None, { - "20230605080000_to_20230605120000.csv": "export/" - "20230605080000_to_20230605120000_functions.csv", - "20230605080000_image.png": "da2d4927045f24bf", - "20230605090000_image.png": "c8270437263f26bf", - "20230605100000_image.png": "c8262437273b373d", - "20230605110000_image.png": "da6d49270437247f", - "20230605120000_image.png": "dad7495b04ab04fa", - "20230605080000_waveform.csv": "export/" - "20230605080000_FE-204-PSO-P1-SP.csv", - "20230605090000_waveform.csv": "export/" - "20230605090000_FE-204-PSO-P1-SP.csv", - "20230605100000_waveform.csv": "export/" - "20230605100000_FE-204-PSO-P1-SP.csv", - "20230605110000_waveform.csv": "export/" - "20230605110000_FE-204-PSO-P1-SP.csv", - "20230605120000_waveform.csv": "export/" - "20230605120000_FE-204-PSO-P1-SP.csv", - "20230605080000_waveform.png": "fa914e6e914eb04d", - "20230605090000_waveform.png": "fa916e6e916e9181", - "20230605100000_waveform.png": "fab14f6e914e90c1", - "20230605110000_waveform.png": "fb914e6e914eb091", - "20230605120000_waveform.png": "ff914e6e914eb081", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv": ( + f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}_functions.csv" + ), + f"{RECORD_ID_05_0800}_image.png": "da2d4927045f24bf", + f"{RECORD_ID_05_0800}_waveform.csv": ( + "export/20230605080000_FE-204-PSO-P1-SP.csv" + ), + f"{RECORD_ID_05_0800}_waveform.png": "fa914e6e914eb04d", + f"{RECORD_ID_05_0803}_image.png": "d5b55a554aaa4a55", + f"{RECORD_ID_05_0803}_waveform.csv": ( + "export/20230605080300_FE-204-PSO-P1-SP.csv" + ), + f"{RECORD_ID_05_0803}_waveform.png": "fa916e6e916e9181", }, id=( "Zip export of main CSV, images, waveform CSVs and " @@ -943,17 +757,7 @@ class TestExport: ), ), pytest.param( - { - "_id": { - "$in": [ - "20230605080000", - "20230605090000", - "20230605100000", - "20230605110000", - "20230605120000", - ], - }, - }, + {"_id": {"$in": [RECORD_ID_05_0800, RECORD_ID_05_0803]}}, 0, 10, "metadata.shotnum ASC", @@ -977,17 +781,14 @@ class TestExport: [ {"name": "image", "expression": "FE-204-PSO-CAM-1 + (1 - 1)"}, ], - "20230605080000_to_20230605120000.zip", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.zip", None, { - "20230605080000_to_20230605120000.csv": ( - "export/20230605080000_to_20230605120000_asc.csv" + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv": ( + f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv" ), - "20230605080000_FE-204-PSO-CAM-1.png": "c73838c6c637c738", - "20230605090000_FE-204-PSO-CAM-1.png": "c73838c7c73838c7", - "20230605100000_FE-204-PSO-CAM-1.png": "c73838c7c73838c7", - "20230605110000_FE-204-PSO-CAM-1.png": "c73938c7c427c738", - "20230605120000_FE-204-PSO-CAM-1.png": "c4c43f273838c6fc", + f"{RECORD_ID_05_0800}_FE-204-PSO-CAM-1.png": "c73838c6c637c738", + f"{RECORD_ID_05_0803}_FE-204-PSO-CAM-1.png": "b624db22fb26d903", }, id=( "Zip export of main CSV with images in false colour " @@ -1094,13 +895,21 @@ def test_csv_export( assert test_response.status_code == 200 + @pytest.mark.parametrize( + ["file_prefix"], + [ + pytest.param("EPAC_", marks=MARK_EPAC_TEST), + pytest.param("GEMINI_", marks=MARK_GEMINI_TEST), + ], + ) def test_export_errors( self, test_app: TestClient, login_and_get_token, + file_prefix: str, ): get_params = [ - f"conditions={json.dumps({'_id': {'$eq': '20230605080300'}})}", + f"conditions={json.dumps({'_id': {'$eq': RECORD_ID_05_0803}})}", "projection=metadata.shotnum", "projection=metadata.timestamp", "projection=metadata.epac_ops_data_version", @@ -1123,10 +932,14 @@ def test_export_errors( TestExport.check_export_headers( test_response, "application/zip", - "20230605080300.zip", + f"{RECORD_ID_05_0803}.zip", + ) + TestExport.check_zip_file_contents( + zip_contents_dict={ + "EXPORT_ERRORS.txt": f"export/{file_prefix}EXPORT_ERRORS.txt", + }, + response=test_response, ) - zip_contents_dict = {"EXPORT_ERRORS.txt": "export/EXPORT_ERRORS.txt"} - TestExport.check_zip_file_contents(zip_contents_dict, test_response) @pytest.mark.parametrize( ["projection", "message"], @@ -1149,7 +962,7 @@ def test_csv_export_failure( message: str, ): get_params = [] - conditions = {"_id": {"$in": ["20230605080000"]}} + conditions = {"_id": {"$in": [RECORD_ID_05_0800]}} get_params.append(f"conditions={json.dumps(conditions)}") get_params.append(f"projection={projection}") TestExport.compile_get_params(get_params, "skip", 0) diff --git a/test/endpoints/test_get_crosshair_intensity.py b/test/endpoints/test_get_crosshair_intensity.py index 4722f4a5..cfca4afe 100644 --- a/test/endpoints/test_get_crosshair_intensity.py +++ b/test/endpoints/test_get_crosshair_intensity.py @@ -4,17 +4,19 @@ from fastapi.testclient import TestClient import pytest +from test.conftest import format_id + class TestGetCrosshairIntensity: @pytest.mark.parametrize( ["channel_name", "functions", "row", "column"], [ - pytest.param("FE-204-NSO-P1-CAM-1", None, [308, 337, 384], [240, 381, 235]), + pytest.param("FE-204-NSO-P1-CAM-1", None, [606, 582, 536], [543, 575, 339]), pytest.param( "a", {"name": "a", "expression": "FE-204-NSO-P1-CAM-1 / 10"}, - [30.8, 33.7, 38.4], - [24.0, 38.1, 23.5], + [60.6, 58.2, 53.6], + [54.3, 57.5, 33.9], ), ], ) @@ -27,7 +29,7 @@ def test_get_crosshair_intensity( test_app: TestClient, login_and_get_token, ): - url = f"/images/20230605100000/{channel_name}/crosshair" + url = f"/images/{format_id('20230605080000123')}/{channel_name}/crosshair" if functions is not None: url += f"?functions={quote(json.dumps(functions))}" test_response = test_app.get( @@ -38,12 +40,12 @@ def test_get_crosshair_intensity( assert test_response.status_code == 200, test_response.content.decode() content_dict = json.loads(test_response.content.decode()) - assert content_dict["row"]["position"] == 607 - assert content_dict["row"]["fwhm"] == 621 + assert content_dict["row"]["position"] == 609 + assert content_dict["row"]["fwhm"] == 616 assert content_dict["row"]["intensity"]["x"][:3] == [0, 1, 2] assert content_dict["row"]["intensity"]["y"][:3] == row assert content_dict["column"]["position"] == 760 - assert content_dict["column"]["fwhm"] == 543 + assert content_dict["column"]["fwhm"] == 539 assert content_dict["column"]["intensity"]["x"][:3] == [0, 1, 2] assert content_dict["column"]["intensity"]["y"][:3] == column diff --git a/test/endpoints/test_get_float_image.py b/test/endpoints/test_get_float_image.py index bd968a41..a5b1add2 100644 --- a/test/endpoints/test_get_float_image.py +++ b/test/endpoints/test_get_float_image.py @@ -5,46 +5,40 @@ from PIL import Image import pytest -from test.conftest import set_preferred_float_colourmap, unset_preferred_float_colourmap +from test.conftest import ( + RECORD_ID_05_0803, + set_preferred_float_colourmap, + unset_preferred_float_colourmap, +) class TestGetImage: @pytest.mark.parametrize( [ - "record_id", - "channel_name", "use_preferred_colourmap", "colourmap_name", "expected_image_phash", ], [ pytest.param( - "20230605080300", - "CM-202-CVC-WFS", False, None, "9b326c6930cf6798", id="Original image", ), pytest.param( - "20230605080300", - "CM-202-CVC-WFS", True, None, "966939966562b665", id="Image using user's preferred colourmap", ), pytest.param( - "20230605080300", - "CM-202-CVC-WFS", False, "berlin", "96493996656ab665", id="Image with all false colour params specified", ), pytest.param( - "20230605080300", - "CM-202-CVC-WFS", True, "berlin", "96493996656ab665", @@ -59,8 +53,6 @@ def test_valid_get_image( self, test_app: TestClient, login_and_get_token: str, - record_id: str, - channel_name: str, use_preferred_colourmap: bool, colourmap_name: str, expected_image_phash: str, @@ -80,7 +72,7 @@ def test_valid_get_image( query_string = "?" + "&".join(query_params_array) test_response = test_app.get( - f"/images/float/{record_id}/{channel_name}{query_string}", + f"/images/float/{RECORD_ID_05_0803}/CM-202-CVC-WFS{query_string}", headers={"Authorization": f"Bearer {login_and_get_token}"}, ) diff --git a/test/endpoints/test_get_image.py b/test/endpoints/test_get_image.py index 6ae42d86..272fc761 100644 --- a/test/endpoints/test_get_image.py +++ b/test/endpoints/test_get_image.py @@ -7,7 +7,12 @@ from PIL import Image import pytest -from test.conftest import set_preferred_colourmap, unset_preferred_colourmap +from test.conftest import ( + RECORD_ID_05_0800, + RECORD_ID_06_1200, + set_preferred_colourmap, + unset_preferred_colourmap, +) class TestGetImage: @@ -25,7 +30,7 @@ class TestGetImage: ], [ pytest.param( - "20230605100000", + RECORD_ID_05_0800, "FE-204-NSO-P1-CAM-1", True, False, @@ -33,11 +38,11 @@ class TestGetImage: None, None, None, - "c8b624a4275e37b5", + "da4a6956047f246f", id="Original image", ), pytest.param( - "20230605100000", + RECORD_ID_05_0800, "FE-204-NSO-P1-CAM-1", False, False, @@ -45,13 +50,13 @@ class TestGetImage: None, None, None, - "c4073b6f3832c799", + "c4343ec13ec33f64", id="Image with default false colour settings", ), # repeat the above test but with the user's preferred colour map set to # check that the preference is used when no specific map is chosen pytest.param( - "20230605100000", + RECORD_ID_05_0800, "FE-204-NSO-P1-CAM-1", False, True, @@ -59,11 +64,11 @@ class TestGetImage: None, None, None, - "c417386737333a1b", + "c43f38c8243e3b8f", id="Image using user's preferred colourmap", ), pytest.param( - "20230605100000", + RECORD_ID_05_0800, "FE-204-NSO-P1-CAM-1", None, False, @@ -77,7 +82,7 @@ class TestGetImage: # repeat the test above but with the user's preferred colour map set to # ensure that it is ignored and the specified colour map used pytest.param( - "20230605100000", + RECORD_ID_05_0800, "FE-204-NSO-P1-CAM-1", None, True, @@ -90,7 +95,7 @@ class TestGetImage: "user's pref)", ), pytest.param( - "20230606120000", + RECORD_ID_06_1200, "CM-202-CVC-CAM-1", True, False, @@ -102,7 +107,7 @@ class TestGetImage: id="v1.1 12 bit image, original", ), pytest.param( - "20230606120000", + RECORD_ID_06_1200, "CM-202-CVC-CAM-1", None, False, @@ -114,7 +119,7 @@ class TestGetImage: id="v1.1 12 bit image, limits in 8 bit", ), pytest.param( - "20230606120000", + RECORD_ID_06_1200, "CM-202-CVC-CAM-1", None, False, diff --git a/test/endpoints/test_get_record_by_id.py b/test/endpoints/test_get_record_by_id.py index 7044956a..2bbeb04c 100644 --- a/test/endpoints/test_get_record_by_id.py +++ b/test/endpoints/test_get_record_by_id.py @@ -6,6 +6,9 @@ from test.conftest import ( assert_record, assert_thumbnails, + MARK_EPAC_TEST, + MARK_GEMINI_TEST, + RECORD_ID_05_0800, set_preferred_colourmap, unset_preferred_colourmap, ) @@ -16,11 +19,20 @@ class TestGetRecordByID: "record_id, truncate, expected_channel_count, expected_channel_data", [ pytest.param( - "20230605100000", + "20230605080000", True, 353, - {"FE-204-LT-CAM-2-CENX": 5.83075538293604}, - id="Ordinary request", + {"FE-204-LT-CAM-2-CENX": 3.2117051242303507}, + marks=MARK_EPAC_TEST, + id="EPAC: Ordinary request", + ), + pytest.param( + "20230605080000123", + True, + 354, # Additional string channel + {"FE-204-LT-CAM-2-CENX": 3.2117051242303507}, + marks=MARK_GEMINI_TEST, + id="Gemini: Ordinary request", ), ], ) @@ -47,24 +59,22 @@ def test_valid_get_record_by_id( ) @pytest.mark.parametrize( - "record_id, expected_thumbnails_hashes, use_preferred_colourmap", + ["expected_thumbnails_hashes", "use_preferred_colourmap"], [ pytest.param( - "20230605100000", { - "FE-204-NSO-P1-CAM-1": "c4bc3f33381c98c7", - "FE-204-NSO-P2-CAM-1": "cd3336f0329b311d", - "TS-202-TSM-CAM-2": "9999666699996666", + "FE-204-NSO-P1-CAM-1": "c03e3df03fd90319", + "FE-204-NSO-P2-CAM-1": "cccc33273d623e85", + "TS-202-TSM-CAM-2": "cc3333cccc3333cc", }, False, id="Ordinary request (preferred colour map not set)", ), pytest.param( - "20230605100000", { - "FE-204-NSO-P1-CAM-1": "c4b83f233b1839c7", - "FE-204-NSO-P2-CAM-1": "cd3336b234333639", - "TS-202-TSM-CAM-2": "9999666699996666", + "FE-204-NSO-P1-CAM-1": "c33f39c338c33839", + "FE-204-NSO-P2-CAM-1": "ccca33b621963f85", + "TS-202-TSM-CAM-2": "cc3333cccc3333cc", }, True, id="Ordinary request (with preferred colour map set)", @@ -75,14 +85,13 @@ def test_image_thumbnails_get_record_by_id( self, test_app: TestClient, login_and_get_token, - record_id, expected_thumbnails_hashes, use_preferred_colourmap, ): set_preferred_colourmap(test_app, login_and_get_token, use_preferred_colourmap) test_response = test_app.get( - f"/records/{record_id}", + f"/records/{RECORD_ID_05_0800}", headers={"Authorization": f"Bearer {login_and_get_token}"}, ) diff --git a/test/endpoints/test_get_records.py b/test/endpoints/test_get_records.py index 4e6e1c3c..98fe4fa4 100644 --- a/test/endpoints/test_get_records.py +++ b/test/endpoints/test_get_records.py @@ -6,6 +6,11 @@ from test.conftest import ( assert_record, assert_thumbnails, + format_datetime_str, + MARK_EPAC_TEST, + MARK_GEMINI_TEST, + RECORD_ID_05_0800, + RECORD_ID_05_0803, set_preferred_colourmap, unset_preferred_colourmap, ) @@ -29,7 +34,8 @@ class TestGetRecords: {"TS-202-TSM-P1-CAM-2-CENX": 3.0393419803062542}, {"TS-202-TSM-P1-CAM-2-CENX": -9.545737525173104}, ], - id="Simple example", + marks=MARK_EPAC_TEST, + id="EPAC: Simple example", ), pytest.param( {"metadata.shotnum": {"$exists": True}}, @@ -60,7 +66,8 @@ class TestGetRecords: }, }, ], - id="Query using a single projection", + marks=MARK_EPAC_TEST, + id="EPAC: Query using a single projection", ), pytest.param( {"metadata.shotnum": {"$exists": True}}, @@ -87,7 +94,8 @@ class TestGetRecords: }, }, ], - id="Query using multiple projections", + marks=MARK_EPAC_TEST, + id="EPAC: Query using multiple projections", ), pytest.param( {"metadata.shotnum": {"$exists": True}}, @@ -100,13 +108,13 @@ class TestGetRecords: [], [ { - "_id": "20230605080000", + "_id": RECORD_ID_05_0800, "channels": { "TS-202-TSM-P1-CAM-2-FWHMX": {"data": 46.402748185135856}, }, }, { - "_id": "20230605080300", + "_id": RECORD_ID_05_0803, "channels": { "TS-202-TSM-P1-CAM-2-FWHMX": {"data": 48.99072710782586}, }, @@ -139,7 +147,8 @@ class TestGetRecords: {"TS-202-TSM-P1-CAM-2-CENX": 3.0393419803062542}, {"TS-202-TSM-P1-CAM-2-CENX": -9.545737525173104}, ], - id="Query with truncate", + marks=MARK_EPAC_TEST, + id="EPAC: Query with truncate", ), pytest.param( {"metadata.shotnum": {"$exists": True}}, @@ -154,7 +163,8 @@ class TestGetRecords: {"TS-202-TSM-P1-CAM-2-CENX": 3.0393419803062542, "test": 1}, {"TS-202-TSM-P1-CAM-2-CENX": -9.545737525173104, "test": 1}, ], - id="Example with functions", + marks=MARK_EPAC_TEST, + id="EPAC: Example with functions", ), pytest.param( {"channels.CM-202-CVC-SP": {"$exists": True}}, @@ -169,7 +179,8 @@ class TestGetRecords: {"test": "bab14eb3d04eb04e"}, {"test": "bb914fb1816e914e"}, ], - id="Example with Waveform function", + marks=MARK_EPAC_TEST, + id="EPAC: Example with Waveform function", ), pytest.param( {"channels.FE-204-NSO-P1-CAM-1": {"$exists": True}}, @@ -184,7 +195,8 @@ class TestGetRecords: {"test": "c73b39c0c00fcc7e"}, {"test": "b712d9f6c061c731"}, ], - id="Example with Image function", + marks=MARK_EPAC_TEST, + id="EPAC: Example with Image function", ), pytest.param( {"metadata.shotnum": 423648000000}, @@ -209,7 +221,8 @@ class TestGetRecords: }, }, ], - id="Query for bit_depth, not present", + marks=MARK_EPAC_TEST, + id="EPAC: Query for bit_depth, not present", ), pytest.param( {"metadata.shotnum": 423649008000}, @@ -235,10 +248,15 @@ class TestGetRecords: }, }, ], - id="Query for bit_depth, present", + marks=MARK_EPAC_TEST, + id="EPAC: Query for bit_depth, present", ), pytest.param( - {"metadata.timestamp": "2023-06-05T08:03:00"}, + { + "metadata.timestamp": format_datetime_str( + "2023-06-05T08:03:00.234000", + ), + }, 0, 1, "metadata.shotnum ASC", @@ -249,6 +267,199 @@ class TestGetRecords: [{"FE-204-NSS-WFS-COEF": "83c0e03ef8c77f30"}], # expected_channels_data id="Query for vector thumbnail", ), + pytest.param( + {"metadata.shotnum": {"$exists": True}}, + 0, + 2, + "metadata.shotnum ASC", + None, + False, + [354, 362], + [], + [ + {"TS-202-TSM-P1-CAM-2-CENX": 3.0393419803062542}, + {"TS-202-TSM-P1-CAM-2-CENX": -9.545737525173104}, + ], + marks=MARK_GEMINI_TEST, + id="Gemini: Simple example", + ), + pytest.param( + {"metadata.shotnum": {"$exists": True}}, + 0, + 2, + "metadata.shotnum ASC", + ["metadata"], + False, + None, + [], + [ + { + "_id": "20230605080000123", + "metadata": { + "active_area": "GD", + "epac_ops_data_version": "1.0", + "shotnum": "20230605-075959", + "timestamp": "2023-06-05T08:00:00.123000", + }, + }, + { + "_id": "20230605080300234", + "metadata": { + "active_area": "GD", + "epac_ops_data_version": "1.2", + "shotnum": "20230605-080259", + "timestamp": "2023-06-05T08:03:00.234000", + }, + }, + ], + marks=MARK_GEMINI_TEST, + id="Gemini: Query using a single projection", + ), + pytest.param( + {"metadata.shotnum": {"$exists": True}}, + 0, + 2, + "metadata.shotnum ASC", + ["metadata.shotnum", "metadata.timestamp"], + False, + None, + [], + [ + { + "_id": "20230605080000123", + "metadata": { + "shotnum": "20230605-075959", + "timestamp": "2023-06-05T08:00:00.123000", + }, + }, + { + "_id": "20230605080300234", + "metadata": { + "shotnum": "20230605-080259", + "timestamp": "2023-06-05T08:03:00.234000", + }, + }, + ], + marks=MARK_GEMINI_TEST, + id="Gemini: Query using multiple projections", + ), + pytest.param( + {"metadata.shotnum": {"$exists": True}}, + 0, + 2, + "metadata.shotnum ASC", + None, + True, + [354, 362], + [], + [ + {"TS-202-TSM-P1-CAM-2-CENX": 3.0393419803062542}, + {"TS-202-TSM-P1-CAM-2-CENX": -9.545737525173104}, + ], + marks=MARK_GEMINI_TEST, + id="Gemini: Query with truncate", + ), + pytest.param( + {"metadata.shotnum": {"$exists": True}}, + 0, + 2, + "metadata.shotnum ASC", + None, + False, + [355, 363], + [{"name": "test", "expression": "1"}], + [ + {"TS-202-TSM-P1-CAM-2-CENX": 3.0393419803062542, "test": 1}, + {"TS-202-TSM-P1-CAM-2-CENX": -9.545737525173104, "test": 1}, + ], + marks=MARK_GEMINI_TEST, + id="Gemini: Example with functions", + ), + pytest.param( + {"channels.CM-202-CVC-SP": {"$exists": True}}, + 0, + 2, + "metadata.shotnum ASC", + None, + False, + [355, 363], + [{"name": "test", "expression": "CM-202-CVC-SP - 700"}], + [ + {"test": "bab14eb3d04eb04e"}, + {"test": "bb914fb1816e914e"}, + ], + marks=MARK_GEMINI_TEST, + id="Gemini: Example with Waveform function", + ), + pytest.param( + {"channels.FE-204-NSO-P1-CAM-1": {"$exists": True}}, + 0, + 2, + "metadata.shotnum ASC", + None, + False, + [355, 363], + [{"name": "test", "expression": "FE-204-NSO-P1-CAM-1 - 700"}], + [ + {"test": "c73b39c0c00fcc7e"}, + {"test": "b712d9f6c061c731"}, + ], + marks=MARK_GEMINI_TEST, + id="Gemini: Example with Image function", + ), + pytest.param( + {"metadata.shotnum": "20230605-075959"}, + 0, + 1, + "metadata.shotnum ASC", + ["channels.CM-202-CVC-CAM-1.metadata"], + False, + None, + [], + [ + { + "_id": "20230605080000123", + "channels": { + "CM-202-CVC-CAM-1": { + "metadata": { + "channel_dtype": "image", + "exposure_time_s": 0.0012, + "gain": 4.826012758558324, + }, + }, + }, + }, + ], + marks=MARK_GEMINI_TEST, + id="Gemini: Query for bit_depth, not present", + ), + pytest.param( + {"metadata.shotnum": "20230606-115959"}, + 0, + 1, + "metadata.shotnum ASC", + ["channels.CM-202-CVC-CAM-1.metadata"], + False, + None, + [], + [ + { + "_id": "20230606120000456", + "channels": { + "CM-202-CVC-CAM-1": { + "metadata": { + "bit_depth": 12, + "channel_dtype": "image", + "exposure_time_s": 0.0012, + "gain": 0.7862722445526737, + }, + }, + }, + }, + ], + marks=MARK_GEMINI_TEST, + id="Gemini: Query for bit_depth, present", + ), ], ) def test_valid_get_records( @@ -306,86 +517,176 @@ def test_valid_get_records( "use_preferred_colourmap, expected_thumbnails_hashes", [ pytest.param( - {"metadata.shotnum": 423648072000}, + {"metadata.shotnum": 423648000000}, None, None, None, None, False, - { - "TS-202-TSM-P2-CAM-1": "cdc134273f0e36e1", - }, - id="Whole record: all channels have channel_dtype returned", + {"TS-202-TSM-P2-CAM-1": "c53933c53bce3146"}, + marks=MARK_EPAC_TEST, + id="EPAC: Whole record: all channels have channel_dtype returned", ), # ensure setting the user's preferred colour map overrides the system # default pytest.param( - {"metadata.shotnum": 423648072000}, + {"metadata.shotnum": 423648000000}, None, None, None, None, True, - { - "TS-202-TSM-P2-CAM-1": "ccc139332d6c3733", - }, - id="Whole record: all channels have channel_dtype returned and user's " - "preferred colour map is set", + {"TS-202-TSM-P2-CAM-1": "c53d32563aaa73c2"}, + marks=MARK_EPAC_TEST, + id=( + "EPAC: Whole record: all channels have channel_dtype returned and " + "user's preferred colour map is set" + ), ), pytest.param( - {"metadata.shotnum": 423648072000}, + {"metadata.shotnum": 423648000000}, "channels.TS-202-TSM-P2-CAM-1.thumbnail", None, None, None, False, - { - "TS-202-TSM-P2-CAM-1": "cdc134273f0e36e1", - }, - id="Partial record: only TS-202-TSM-P2-CAM-1 and no channel_dtype" - " returned", + {"TS-202-TSM-P2-CAM-1": "c53933c53bce3146"}, + marks=MARK_EPAC_TEST, + id=( + "EPAC: Partial record: only TS-202-TSM-P2-CAM-1 and no " + "channel_dtype returned" + ), ), pytest.param( - {"metadata.shotnum": 423648072000}, + {"metadata.shotnum": 423648000000}, None, 50, 200, "jet_r", False, - { - "TS-202-TSM-P2-CAM-1": "8000000000000000", - }, - id="Whole record: all channels have channel_dtype returned " - "and custom false colour settings applied", + {"TS-202-TSM-P2-CAM-1": "8000000000000000"}, + marks=MARK_EPAC_TEST, + id=( + "EPAC: Whole record: all channels have channel_dtype returned and " + "custom false colour settings applied" + ), ), # repeat the test above but with the user's preferred colour map set # ensure this does not affect the outcome pytest.param( - {"metadata.shotnum": 423648072000}, + {"metadata.shotnum": 423648000000}, None, 50, 200, "jet_r", True, - { - "TS-202-TSM-P2-CAM-1": "8000000000000000", - }, - id="Whole record: all channels have channel_dtype returned " - "and custom false colour settings applied even with user's " - "preferred colour map set", + {"TS-202-TSM-P2-CAM-1": "8000000000000000"}, + marks=MARK_EPAC_TEST, + id=( + "EPAC: Whole record: all channels have channel_dtype returned and " + "custom false colour settings applied even with user's preferred " + "colour map set" + ), ), pytest.param( - {"metadata.shotnum": 423648072000}, + {"metadata.shotnum": 423648000000}, "channels.TS-202-TSM-P2-CAM-1.thumbnail", 50, 200, "jet_r", False, - { - "TS-202-TSM-P2-CAM-1": "8000000000000000", - }, - id="Partial record: only TS-202-TSM-P2-CAM-1 and no channel_dtype" - " returned and custom false colour settings applied", + {"TS-202-TSM-P2-CAM-1": "8000000000000000"}, + marks=MARK_EPAC_TEST, + id=( + "EPAC: Partial record: only TS-202-TSM-P2-CAM-1 and no " + "channel_dtype returned and custom false colour settings applied" + ), + ), + pytest.param( + {"metadata.shotnum": "20230605-075959"}, + None, + None, + None, + None, + False, + {"TS-202-TSM-P2-CAM-1": "c53933c53bce3146"}, + marks=MARK_GEMINI_TEST, + id="Gemini: Whole record: all channels have channel_dtype returned", + ), + # ensure setting the user's preferred colour map overrides the system + # default + pytest.param( + {"metadata.shotnum": "20230605-075959"}, + None, + None, + None, + None, + True, + {"TS-202-TSM-P2-CAM-1": "c53d32563aaa73c2"}, + marks=MARK_GEMINI_TEST, + id=( + "Gemini: Whole record: all channels have channel_dtype returned " + "and user's preferred colour map is set" + ), + ), + pytest.param( + {"metadata.shotnum": "20230605-075959"}, + "channels.TS-202-TSM-P2-CAM-1.thumbnail", + None, + None, + None, + False, + {"TS-202-TSM-P2-CAM-1": "c53933c53bce3146"}, + marks=MARK_GEMINI_TEST, + id=( + "Gemini: Partial record: only TS-202-TSM-P2-CAM-1 and no " + "channel_dtype returned" + ), + ), + pytest.param( + {"metadata.shotnum": "20230605-075959"}, + None, + 50, + 200, + "jet_r", + False, + {"TS-202-TSM-P2-CAM-1": "8000000000000000"}, + marks=MARK_GEMINI_TEST, + id=( + "Gemini: Whole record: all channels have channel_dtype returned " + "and custom false colour settings applied" + ), + ), + # repeat the test above but with the user's preferred colour map set + # ensure this does not affect the outcome + pytest.param( + {"metadata.shotnum": "20230605-075959"}, + None, + 50, + 200, + "jet_r", + True, + {"TS-202-TSM-P2-CAM-1": "8000000000000000"}, + marks=MARK_GEMINI_TEST, + id=( + "Gemini: Whole record: all channels have channel_dtype returned " + "and custom false colour settings applied even with user's " + "preferred colour map set" + ), + ), + pytest.param( + {"metadata.shotnum": "20230605-075959"}, + "channels.TS-202-TSM-P2-CAM-1.thumbnail", + 50, + 200, + "jet_r", + False, + {"TS-202-TSM-P2-CAM-1": "8000000000000000"}, + marks=MARK_GEMINI_TEST, + id=( + "Gemini: Partial record: only TS-202-TSM-P2-CAM-1 and no " + "channel_dtype returned and custom false colour settings applied" + ), ), ], ) diff --git a/test/endpoints/test_get_vector.py b/test/endpoints/test_get_vector.py index cb18a94a..3a9de9d9 100644 --- a/test/endpoints/test_get_vector.py +++ b/test/endpoints/test_get_vector.py @@ -1,5 +1,7 @@ from fastapi.testclient import TestClient +from test.conftest import RECORD_ID_05_0803 + class TestGetVectorById: def test_get_vector( @@ -9,7 +11,7 @@ def test_get_vector( ): test_response = test_app.get( - "/vectors/20230605080300/CM-202-CVC-WFS-COEF", + f"/vectors/{RECORD_ID_05_0803}/CM-202-CVC-WFS-COEF", headers={"Authorization": f"Bearer {login_and_get_token}"}, ) @@ -46,12 +48,12 @@ def test_get_vector_failure( ): test_response = test_app.get( - "/vectors/20230605080300/test", + f"/vectors/{RECORD_ID_05_0803}/test", headers={"Authorization": f"Bearer {login_and_get_token}"}, ) assert test_response.status_code == 404 assert test_response.json()["detail"] == ( - "Vector with id=20230605080300, channel=test could not be found due to " - "invalid id and or channel" + f"Vector with id={RECORD_ID_05_0803}, channel=test could not be " + "found due to invalid id and or channel" ) diff --git a/test/endpoints/test_get_waveform_by_id.py b/test/endpoints/test_get_waveform_by_id.py index 4dab9926..6ff1cee3 100644 --- a/test/endpoints/test_get_waveform_by_id.py +++ b/test/endpoints/test_get_waveform_by_id.py @@ -4,33 +4,32 @@ from fastapi.testclient import TestClient import pytest +from test.conftest import RECORD_ID_05_0800 + class TestGetWaveformByID: @pytest.mark.parametrize( - "record_id, channel_name, functions, expected_first_x, expected_first_y", + ["channel_name", "functions", "expected_first_x", "expected_first_y"], [ pytest.param( - "20230605100000", "CM-202-CVC-SP", None, 645.0, - 1803.1355895081488, + 1356.1113440695408, id="Ordinary request", ), pytest.param( - "20230605100000", "CM-202-CVC-SP", {"name": "a", "expression": "CM-202-CVC-SP / 100"}, 645.0, - 1803.1355895081488, + 1356.1113440695408, id="Request with unused function", ), pytest.param( - "20230605100000", "a", {"name": "a", "expression": "CM-202-CVC-SP / 100"}, 645.0, - 18.031355895081488, + 13.561113440695408, id="Request with used function", ), ], @@ -39,7 +38,6 @@ def test_valid_get_waveform_by_id( self, test_app: TestClient, login_and_get_token, - record_id, channel_name, functions: "dict[str, str]", expected_first_x, @@ -51,7 +49,7 @@ def test_valid_get_waveform_by_id( functions_str = "" test_response = test_app.get( - f"/waveforms/{record_id}/{channel_name}{functions_str}", + f"/waveforms/{RECORD_ID_05_0800}/{channel_name}{functions_str}", headers={"Authorization": f"Bearer {login_and_get_token}"}, ) diff --git a/test/endpoints/test_manifest.json b/test/endpoints/test_manifest.json index 6507ba09..a92b1d9b 100644 --- a/test/endpoints/test_manifest.json +++ b/test/endpoints/test_manifest.json @@ -2642,6 +2642,11 @@ "notation": "normal", "units": "%RH", "type": "scalar" + }, + "ASTRA_CONTROL_MODE_STRING": { + "name": "Astra control mode", + "path": "/astra", + "type": "string" } } } \ No newline at end of file diff --git a/test/endpoints/test_range_converter.py b/test/endpoints/test_range_converter.py index 47e05b67..3ef4bee3 100644 --- a/test/endpoints/test_range_converter.py +++ b/test/endpoints/test_range_converter.py @@ -5,6 +5,7 @@ from operationsgateway_api.src.exceptions import ModelError from operationsgateway_api.src.models import ShotnumConverterRange +from test.conftest import MARK_EPAC_TEST, MARK_GEMINI_TEST class TestRangeConverter: @@ -13,43 +14,132 @@ class TestRangeConverter: [ pytest.param( None, - {"min": 423648036000, "max": 423648288000}, - {"from": "2023-06-05T09:00:00", "to": "2023-06-05T16:00:00"}, - id="Shotnum to date range", + {"min": 423648001800, "max": 423648291600}, + {"from": "2023-06-05T08:03:00", "to": "2023-06-05T08:03:00"}, + marks=MARK_EPAC_TEST, + id="EPAC: Shotnum to date range", ), pytest.param( - {"from": "2023-06-05 08:16:19", "to": "2023-06-05 21:00:00"}, + {"from": "2023-06-05 08:02:19", "to": "2023-06-05 21:00:00"}, None, - {"min": 423648036000, "max": 423648288000}, - id="Date to shotnum range", + {"min": 423648001800, "max": 423648001800}, + marks=MARK_EPAC_TEST, + id="EPAC: Date to shotnum range", ), pytest.param( None, {"min": 1234, "max": 423648072000}, - {"from": "2023-06-05T08:00:00", "to": "2023-06-05T10:00:00"}, - id="Shotnum to date range where min shotnum < first shotnum stored in" - " database", + {"from": "2023-06-05T08:00:00", "to": "2023-06-05T08:03:00"}, + marks=MARK_EPAC_TEST, + id=( + "EPAC: Shotnum to date range where min shotnum < first shotnum " + "stored in database" + ), ), pytest.param( None, {"min": 423648072000, "max": 999999999999}, - {"from": "2023-06-05T10:00:00", "to": "2023-06-06T12:00:00"}, - id="Shotnum to date range where max shotnum > last shotnum stored in" - " database", + {"from": "2023-06-06T12:00:00", "to": "2023-06-06T12:00:00"}, + marks=MARK_EPAC_TEST, + id=( + "EPAC: Shotnum to date range where max shotnum > last shotnum " + "stored in database" + ), ), pytest.param( {"from": "2000-01-01 00:00:00", "to": "2023-06-05 12:00:00"}, None, - {"min": 423648000000, "max": 423648144000}, - id="Date to shotnum range where from date < first timestamp stored in" - " database", + {"min": 423648000000, "max": 423648001800}, + marks=MARK_EPAC_TEST, + id=( + "EPAC: Date to shotnum range where from date < first timestamp " + "stored in database" + ), ), pytest.param( {"from": "2022-04-07T15:10:00", "to": "2100-01-01 18:00:00"}, None, {"min": 423648000000, "max": 423649008000}, - id="Date to shotnum range where to date > last timestamp stored in" - " database", + marks=MARK_EPAC_TEST, + id=( + "EPAC: Date to shotnum range where to date > last timestamp stored " + "in database" + ), + ), + pytest.param( + None, + {"min": "20230605-080000", "max": "20230605-090000", "type": "GD"}, + { + "from": "2023-06-05T08:03:00.234000", + "to": "2023-06-05T08:03:00.234000", + }, + marks=MARK_GEMINI_TEST, + id="Gemini: Shotnum to date range", + ), + pytest.param( + { + "from": "2023-06-05 08:02:19", + "to": "2023-06-05 21:00:00", + "type": "GD", + }, + None, + {"min": "20230605-080259", "max": "20230605-080259"}, + marks=MARK_GEMINI_TEST, + id="Gemini: Date to shotnum range", + ), + pytest.param( + None, + {"min": "20200101-080000", "max": "20230605-090000", "type": "GD"}, + { + "from": "2023-06-05T08:00:00.123000", + "to": "2023-06-05T08:03:00.234000", + }, + marks=MARK_GEMINI_TEST, + id=( + "Gemini: Shotnum to date range where min shotnum < first shotnum " + "stored in database" + ), + ), + pytest.param( + None, + {"min": "20230605-080000", "max": "30000101-090000", "type": "GD"}, + { + "from": "2023-06-05T08:03:00.234000", + "to": "2023-06-06T12:00:00.456000", + }, + marks=MARK_GEMINI_TEST, + id=( + "Gemini: Shotnum to date range where max shotnum > last shotnum " + "stored in database" + ), + ), + pytest.param( + { + "from": "2000-01-01 00:00:00", + "to": "2023-06-05 12:00:00", + "type": "GD", + }, + None, + {"min": "20230605-075959", "max": "20230605-080259"}, + marks=MARK_GEMINI_TEST, + id=( + "Gemini: Date to shotnum range where from date < first timestamp " + "stored in database" + ), + ), + pytest.param( + { + "from": "2022-04-07T15:10:00", + "to": "2100-01-01 18:00:00", + "type": "GD", + }, + None, + {"min": "20230605-075959", "max": "20230606-115959"}, + marks=MARK_GEMINI_TEST, + id=( + "Gemini: Date to shotnum range where to date > last timestamp " + "stored in database" + ), ), ], ) @@ -214,8 +304,12 @@ def test_valid_shotnum_converter_range(self, payload): id="Mixed min int max string", ), pytest.param( - {"type": "GS", "min": "GA123", "max": "GA456"}, - id="Shotnums do not match type", + {"type": "GS", "min": "GA123", "max": "GS456"}, + id="Min shotnum does not match type", + ), + pytest.param( + {"type": "GS", "min": "GS123", "max": "GA456"}, + id="Max shotnum does not match type", ), pytest.param( {"type": "GA", "min": "GA456", "max": "GA123"}, diff --git a/test/endpoints/test_submit_hdf.py b/test/endpoints/test_submit_hdf.py index 6b43f171..7c39c234 100644 --- a/test/endpoints/test_submit_hdf.py +++ b/test/endpoints/test_submit_hdf.py @@ -9,7 +9,11 @@ from operationsgateway_api.src.config import Config from operationsgateway_api.src.exceptions import DatabaseError, EchoS3Error -from operationsgateway_api.src.records.echo_interface import get_echo_interface +from operationsgateway_api.src.records.echo_interface import ( + EchoInterface, + get_echo_interface, +) +from test.conftest import RECORD_ID_TMP from test.records.ingestion.create_test_hdf import create_test_hdf_file @@ -148,9 +152,10 @@ async def test_ingest_data_success( ) expected_response = { - "message": "Added as 20200407142816", + "message": f"Added as {RECORD_ID_TMP}", "response": { "accepted_channels": [ + "ASTRA_CONTROL_MODE_STRING", "CM-202-CVC-WFS", "CM-202-CVC-WFS-COEF", "PM-201-FE-CAM-1", @@ -193,9 +198,10 @@ async def test_merge_record_success( headers={"Authorization": f"Bearer {login_and_get_token}"}, files=files, ) - cache_path_1 = Config.config.backup.cache_directory / "2020/04/07/142816/1.hdf5" + directories = EchoInterface.format_record_id(RECORD_ID_TMP) + cache_path_1 = Config.config.backup.cache_directory / directories / "1.hdf5" assert cache_path_1.exists() - assert cache_path_1.stat().st_size == 115056 + assert cache_path_1.stat().st_size == 117264 get_echo_interface.cache_clear() test_response = test_app_backup_enabled.post( @@ -206,10 +212,11 @@ async def test_merge_record_success( channel_present_message = "Channel is already present in existing record" expected_response = { - "message": "Updated 20200407142816", + "message": f"Updated {RECORD_ID_TMP}", "response": { "accepted_channels": [], "rejected_channels": { + "ASTRA_CONTROL_MODE_STRING": channel_present_message, "CM-202-CVC-WFS": channel_present_message, "CM-202-CVC-WFS-COEF": channel_present_message, "PM-201-FE-CAM-1": channel_present_message, @@ -235,9 +242,9 @@ async def test_merge_record_success( assert test_response.json() == expected_response assert test_response.status_code == 200 - cache_path_2 = Config.config.backup.cache_directory / "2020/04/07/142816/2.hdf5" + cache_path_2 = Config.config.backup.cache_directory / directories / "2.hdf5" assert cache_path_2.exists() - assert cache_path_2.stat().st_size == 115056 + assert cache_path_2.stat().st_size == 117264 temporary_file = SpooledTemporaryFile() with h5py.File(temporary_file, "w") as f: @@ -258,7 +265,7 @@ async def test_merge_record_success( ) expected_response = { - "message": "Updated 20200407142816", + "message": f"Updated {RECORD_ID_TMP}", "response": { "accepted_channels": ["PM-201-TJ-CRY-T"], "rejected_channels": {}, @@ -268,7 +275,7 @@ async def test_merge_record_success( assert test_response.json() == expected_response assert test_response.status_code == 200 - cache_path_3 = Config.config.backup.cache_directory / "2020/04/07/142816/3.hdf5" + cache_path_3 = Config.config.backup.cache_directory / directories / "3.hdf5" assert cache_path_3.exists() assert cache_path_3.stat().st_size == 7080 @@ -335,7 +342,7 @@ async def test_channel_all_fail( ) expected_response = { - "message": "Added as 20200407142816", + "message": f"Added as {RECORD_ID_TMP}", "response": { "accepted_channels": ["CM-202-CVC-WFS-COEF"], "rejected_channels": { @@ -386,7 +393,7 @@ async def test_channel_multiple_reject_types( ) expected_response = { - "message": "Updated 20200407142816", + "message": f"Updated {RECORD_ID_TMP}", "response": { "accepted_channels": ["PM-201-TJ-CAM-2-FWHMY"], "rejected_channels": { @@ -432,7 +439,7 @@ async def test_echo_failure_on_start( assert test_response.status_code == 201 expected_response = { - "message": "Added as 20200407142816", + "message": f"Added as {RECORD_ID_TMP}", "response": { "accepted_channels": ["PM-201-TJ-CAM-2-FWHMY"], "rejected_channels": { @@ -541,7 +548,7 @@ def mock_upload_file_object(file_object, object_path): assert test_response.status_code == 201 expected_response = { - "message": "Added as 20200407142816", + "message": f"Added as {RECORD_ID_TMP}", "response": { "accepted_channels": ["PM-201-HJ-PD", "PM-201-TJ-CAM-2-FWHMY"], "rejected_channels": { diff --git a/test/export/20230605070600_to_20230605120000.csv b/test/export/20230605070600_to_20230605120000.csv deleted file mode 100644 index 2d4d5091..00000000 --- a/test/export/20230605070600_to_20230605120000.csv +++ /dev/null @@ -1,16 +0,0 @@ -"shotnum","timestamp","epac_ops_data_version","FE-204-PSO-EM", -,2023-06-05 07:06:00,"1.0",, -,2023-06-05 07:12:00,"1.0",, -,2023-06-05 07:18:00,"1.0",, -,2023-06-05 07:24:00,"1.0",, -,2023-06-05 07:30:00,"1.0",, -,2023-06-05 07:36:00,"1.0",, -,2023-06-05 07:42:00,"1.0",, -,2023-06-05 07:48:00,"1.0",, -,2023-06-05 07:54:00,"1.0",, -423648000000,2023-06-05 08:00:00,"1.0",0.00010594708035376446, -423648001800,2023-06-05 08:03:00,"1.2",9.053426445532069e-05, -423648036000,2023-06-05 09:00:00,"1.0",9.375810612751191e-05, -423648072000,2023-06-05 10:00:00,"1.0",9.462430835085363e-05, -423648108000,2023-06-05 11:00:00,"1.0",9.875110257767279e-05, -423648144000,2023-06-05 12:00:00,"1.0",0.00010982626424599755, diff --git a/test/export/20230605080000123.csv b/test/export/20230605080000123.csv new file mode 100644 index 00000000..2ce3a957 --- /dev/null +++ b/test/export/20230605080000123.csv @@ -0,0 +1,2 @@ +"shotnum","timestamp","epac_ops_data_version","FE-204-PSO-EM", +"20230605-075959",2023-06-05 08:00:00.123000,"1.0",0.00010594708035376446, diff --git a/test/export/20230605080000123_to_20230605080300234.csv b/test/export/20230605080000123_to_20230605080300234.csv new file mode 100644 index 00000000..6d34223a --- /dev/null +++ b/test/export/20230605080000123_to_20230605080300234.csv @@ -0,0 +1,3 @@ +"shotnum","timestamp","epac_ops_data_version","FE-204-PSO-EM", +"20230605-075959",2023-06-05 08:00:00.123000,"1.0",0.00010594708035376446, +"20230605-080259",2023-06-05 08:03:00.234000,"1.2",9.053426445532069e-05, diff --git a/test/export/20230605080000123_to_20230605080300234_FE-204-PSO-EM.csv b/test/export/20230605080000123_to_20230605080300234_FE-204-PSO-EM.csv new file mode 120000 index 00000000..b5b226aa --- /dev/null +++ b/test/export/20230605080000123_to_20230605080300234_FE-204-PSO-EM.csv @@ -0,0 +1 @@ +20230605080000_to_20230605080300_FE-204-PSO-EM.csv \ No newline at end of file diff --git a/test/export/20230605080000123_to_20230605080300234_ID.csv b/test/export/20230605080000123_to_20230605080300234_ID.csv new file mode 100644 index 00000000..9ec06086 --- /dev/null +++ b/test/export/20230605080000123_to_20230605080300234_ID.csv @@ -0,0 +1,3 @@ +"ID", +"20230605080000123", +"20230605080300234", diff --git a/test/export/20230605080000123_to_20230605080300234_desc.csv b/test/export/20230605080000123_to_20230605080300234_desc.csv new file mode 100644 index 00000000..fd2f0405 --- /dev/null +++ b/test/export/20230605080000123_to_20230605080300234_desc.csv @@ -0,0 +1,3 @@ +"shotnum","timestamp","epac_ops_data_version","FE-204-PSO-EM", +"20230605-080259",2023-06-05 08:03:00.234000,"1.2",9.053426445532069e-05, +"20230605-075959",2023-06-05 08:00:00.123000,"1.0",0.00010594708035376446, diff --git a/test/export/20230605080000123_to_20230605080300234_functions.csv b/test/export/20230605080000123_to_20230605080300234_functions.csv new file mode 100644 index 00000000..b2939e1e --- /dev/null +++ b/test/export/20230605080000123_to_20230605080300234_functions.csv @@ -0,0 +1,3 @@ +"shotnum","timestamp","epac_ops_data_version","scalar", +"20230605-075959",2023-06-05 08:00:00.123000,"1.0",1.0001059470803537, +"20230605-080259",2023-06-05 08:03:00.234000,"1.2",1.0000905342644553, diff --git a/test/export/20230605080000123_to_20230605080300234_incl_id.csv b/test/export/20230605080000123_to_20230605080300234_incl_id.csv new file mode 100644 index 00000000..28694f17 --- /dev/null +++ b/test/export/20230605080000123_to_20230605080300234_incl_id.csv @@ -0,0 +1,3 @@ +"ID","shotnum","timestamp","epac_ops_data_version","FE-204-PSO-EM", +"20230605080000123","20230605-075959",2023-06-05 08:00:00.123000,"1.0",0.00010594708035376446, +"20230605080300234","20230605-080259",2023-06-05 08:03:00.234000,"1.2",9.053426445532069e-05, diff --git a/test/export/20230605080000123_to_20230605170000345.csv b/test/export/20230605080000123_to_20230605170000345.csv new file mode 100644 index 00000000..a7932902 --- /dev/null +++ b/test/export/20230605080000123_to_20230605170000345.csv @@ -0,0 +1,4 @@ +"shotnum","timestamp","epac_ops_data_version","FE-204-PSO-EM", +"20230605-075959",2023-06-05 08:00:00.123000,"1.0",0.00010594708035376446, +"20230605-080259",2023-06-05 08:03:00.234000,"1.2",9.053426445532069e-05, +"GA123",2023-06-05 17:00:00.345000,"1.0",, diff --git a/test/export/20230605080000_to_20230605080300.csv b/test/export/20230605080000_to_20230605080300.csv new file mode 100644 index 00000000..e89fb6c3 --- /dev/null +++ b/test/export/20230605080000_to_20230605080300.csv @@ -0,0 +1,3 @@ +"shotnum","timestamp","epac_ops_data_version","FE-204-PSO-EM", +423648000000,2023-06-05 08:00:00,"1.0",0.00010594708035376446, +423648001800,2023-06-05 08:03:00,"1.2",9.053426445532069e-05, diff --git a/test/export/20230605080000_to_20230605080300_FE-204-PSO-EM.csv b/test/export/20230605080000_to_20230605080300_FE-204-PSO-EM.csv new file mode 100644 index 00000000..4999493e --- /dev/null +++ b/test/export/20230605080000_to_20230605080300_FE-204-PSO-EM.csv @@ -0,0 +1,3 @@ +"FE-204-PSO-EM", +0.00010594708035376446, +9.053426445532069e-05, diff --git a/test/export/20230605080000_to_20230605080300_ID.csv b/test/export/20230605080000_to_20230605080300_ID.csv new file mode 100644 index 00000000..db031c38 --- /dev/null +++ b/test/export/20230605080000_to_20230605080300_ID.csv @@ -0,0 +1,3 @@ +"ID", +"20230605080000", +"20230605080300", diff --git a/test/export/20230605080000_to_20230605080300_desc.csv b/test/export/20230605080000_to_20230605080300_desc.csv new file mode 100644 index 00000000..3dae905f --- /dev/null +++ b/test/export/20230605080000_to_20230605080300_desc.csv @@ -0,0 +1,3 @@ +"shotnum","timestamp","epac_ops_data_version","FE-204-PSO-EM", +423648001800,2023-06-05 08:03:00,"1.2",9.053426445532069e-05, +423648000000,2023-06-05 08:00:00,"1.0",0.00010594708035376446, diff --git a/test/export/20230605080000_to_20230605080300_functions.csv b/test/export/20230605080000_to_20230605080300_functions.csv new file mode 100644 index 00000000..221f624e --- /dev/null +++ b/test/export/20230605080000_to_20230605080300_functions.csv @@ -0,0 +1,3 @@ +"shotnum","timestamp","epac_ops_data_version","scalar", +423648000000,2023-06-05 08:00:00,"1.0",1.0001059470803537, +423648001800,2023-06-05 08:03:00,"1.2",1.0000905342644553, diff --git a/test/export/20230605080000_to_20230605080300_incl_id.csv b/test/export/20230605080000_to_20230605080300_incl_id.csv new file mode 100644 index 00000000..fc26a87b --- /dev/null +++ b/test/export/20230605080000_to_20230605080300_incl_id.csv @@ -0,0 +1,3 @@ +"ID","shotnum","timestamp","epac_ops_data_version","FE-204-PSO-EM", +"20230605080000",423648000000,2023-06-05 08:00:00,"1.0",0.00010594708035376446, +"20230605080300",423648001800,2023-06-05 08:03:00,"1.2",9.053426445532069e-05, diff --git a/test/export/20230605080000_to_20230605120000_FE-204-PSO-EM.csv b/test/export/20230605080000_to_20230605120000_FE-204-PSO-EM.csv deleted file mode 100644 index b9c95fe4..00000000 --- a/test/export/20230605080000_to_20230605120000_FE-204-PSO-EM.csv +++ /dev/null @@ -1,6 +0,0 @@ -"FE-204-PSO-EM", -0.00010594708035376446, -9.375810612751191e-05, -9.462430835085363e-05, -9.875110257767279e-05, -0.00010982626424599755, diff --git a/test/export/20230605080000_to_20230605120000_ID.csv b/test/export/20230605080000_to_20230605120000_ID.csv deleted file mode 100644 index f35997f5..00000000 --- a/test/export/20230605080000_to_20230605120000_ID.csv +++ /dev/null @@ -1,6 +0,0 @@ -"ID", -"20230605080000", -"20230605090000", -"20230605100000", -"20230605110000", -"20230605120000", diff --git a/test/export/20230605080000_to_20230605120000_asc.csv b/test/export/20230605080000_to_20230605120000_asc.csv deleted file mode 100644 index 8c580df8..00000000 --- a/test/export/20230605080000_to_20230605120000_asc.csv +++ /dev/null @@ -1,6 +0,0 @@ -"shotnum","timestamp","epac_ops_data_version","FE-204-PSO-EM", -423648000000,2023-06-05 08:00:00,"1.0",0.00010594708035376446, -423648036000,2023-06-05 09:00:00,"1.0",9.375810612751191e-05, -423648072000,2023-06-05 10:00:00,"1.0",9.462430835085363e-05, -423648108000,2023-06-05 11:00:00,"1.0",9.875110257767279e-05, -423648144000,2023-06-05 12:00:00,"1.0",0.00010982626424599755, diff --git a/test/export/20230605080000_to_20230605120000_asc_incl_id.csv b/test/export/20230605080000_to_20230605120000_asc_incl_id.csv deleted file mode 100644 index f3751eb6..00000000 --- a/test/export/20230605080000_to_20230605120000_asc_incl_id.csv +++ /dev/null @@ -1,6 +0,0 @@ -"ID","shotnum","timestamp","epac_ops_data_version","FE-204-PSO-EM", -"20230605080000",423648000000,2023-06-05 08:00:00,"1.0",0.00010594708035376446, -"20230605090000",423648036000,2023-06-05 09:00:00,"1.0",9.375810612751191e-05, -"20230605100000",423648072000,2023-06-05 10:00:00,"1.0",9.462430835085363e-05, -"20230605110000",423648108000,2023-06-05 11:00:00,"1.0",9.875110257767279e-05, -"20230605120000",423648144000,2023-06-05 12:00:00,"1.0",0.00010982626424599755, diff --git a/test/export/20230605080000_to_20230605120000_desc.csv b/test/export/20230605080000_to_20230605120000_desc.csv deleted file mode 100644 index f4e524f7..00000000 --- a/test/export/20230605080000_to_20230605120000_desc.csv +++ /dev/null @@ -1,6 +0,0 @@ -"shotnum","timestamp","epac_ops_data_version","FE-204-PSO-EM", -423648144000,2023-06-05 12:00:00,"1.0",0.00010982626424599755, -423648108000,2023-06-05 11:00:00,"1.0",9.875110257767279e-05, -423648072000,2023-06-05 10:00:00,"1.0",9.462430835085363e-05, -423648036000,2023-06-05 09:00:00,"1.0",9.375810612751191e-05, -423648000000,2023-06-05 08:00:00,"1.0",0.00010594708035376446, diff --git a/test/export/20230605080000_to_20230605120000_functions.csv b/test/export/20230605080000_to_20230605120000_functions.csv deleted file mode 100644 index 9712b3a5..00000000 --- a/test/export/20230605080000_to_20230605120000_functions.csv +++ /dev/null @@ -1,6 +0,0 @@ -"shotnum","timestamp","epac_ops_data_version","scalar", -423648000000,2023-06-05 08:00:00,"1.0",1.0001059470803537, -423648036000,2023-06-05 09:00:00,"1.0",1.0000937581061276, -423648072000,2023-06-05 10:00:00,"1.0",1.0000946243083508, -423648108000,2023-06-05 11:00:00,"1.0",1.0000987511025776, -423648144000,2023-06-05 12:00:00,"1.0",1.000109826264246, diff --git a/test/export/20230605080000_to_20230605170000.csv b/test/export/20230605080000_to_20230605170000.csv new file mode 100644 index 00000000..2bf87272 --- /dev/null +++ b/test/export/20230605080000_to_20230605170000.csv @@ -0,0 +1,4 @@ +"shotnum","timestamp","epac_ops_data_version","FE-204-PSO-EM", +423648000000,2023-06-05 08:00:00,"1.0",0.00010594708035376446, +423648001800,2023-06-05 08:03:00,"1.2",9.053426445532069e-05, +,2023-06-05 17:00:00,"1.0",, diff --git a/test/export/20230605080300_asc.csv b/test/export/20230605080300.csv similarity index 100% rename from test/export/20230605080300_asc.csv rename to test/export/20230605080300.csv diff --git a/test/export/20230605080300234.csv b/test/export/20230605080300234.csv new file mode 100644 index 00000000..62312146 --- /dev/null +++ b/test/export/20230605080300234.csv @@ -0,0 +1,2 @@ +"shotnum","timestamp","epac_ops_data_version","FE-204-PSO-EM", +"20230605-080259",2023-06-05 08:03:00.234000,"1.2",9.053426445532069e-05, diff --git a/test/export/20230605080300234_no_channels.csv b/test/export/20230605080300234_no_channels.csv new file mode 100644 index 00000000..444ee92f --- /dev/null +++ b/test/export/20230605080300234_no_channels.csv @@ -0,0 +1,2 @@ +"shotnum","timestamp","epac_ops_data_version", +"20230605-080259",2023-06-05 08:03:00.234000,"1.2", diff --git a/test/export/20230605080300_FE-204-PSO-P1-SP.csv b/test/export/20230605080300_FE-204-PSO-P1-SP.csv new file mode 100644 index 00000000..52e6e90d --- /dev/null +++ b/test/export/20230605080300_FE-204-PSO-P1-SP.csv @@ -0,0 +1,1516 @@ +645.0,1057.1819998133722 +645.2904290429043,851.0920791662649 +645.5808580858086,1018.8707010910032 +645.8712871287129,1456.221032509267 +646.1617161716172,790.0265801438845 +646.4521452145215,503.2257487781561 +646.7425742574258,939.5330864618795 +647.03300330033,962.5734574053159 +647.3234323432343,661.824340407071 +647.6138613861386,633.9208716678911 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-1085.0,783.772361530439 diff --git a/test/export/EXPORT_ERRORS.txt b/test/export/EPAC_EXPORT_ERRORS.txt similarity index 100% rename from test/export/EXPORT_ERRORS.txt rename to test/export/EPAC_EXPORT_ERRORS.txt diff --git a/test/export/GEMINI_EXPORT_ERRORS.txt b/test/export/GEMINI_EXPORT_ERRORS.txt new file mode 100644 index 00000000..3f25f802 --- /dev/null +++ b/test/export/GEMINI_EXPORT_ERRORS.txt @@ -0,0 +1,2 @@ +Could not find float image for 20230605080300234 FE-204-LT-WFS +Could not find vector for 20230605080300234 FE-204-LT-WFS-COEF diff --git a/test/pytest.ini.example b/test/pytest.ini.example new file mode 100644 index 00000000..b1783380 --- /dev/null +++ b/test/pytest.ini.example @@ -0,0 +1,20 @@ +[pytest] +asyncio_mode=auto +env = + ; EPAC ingest config overrides + ; DATABASE__CONNECTION_URI=mongodb://localhost:27017/opsgateway-epac + ; SOURCE__SIMULATED_DATA_BUCKET=og-ci-simulated-data-epac + ; API__STORAGE_BUCKET=og-patrick-dev-epac + ; EPAC API config overrides + ; APP__USE_SUB_SECOND_TIMESTAMPS=False + ; ECHO__BUCKET_NAME=og-yourname-dev-epac + ; MONGODB__DATABASE_NAME=opsgateway-epac + + ; Gemini ingest config overrides + ; DATABASE__CONNECTION_URI=mongodb://localhost:27017/opsgateway-gemini + ; SOURCE__SIMULATED_DATA_BUCKET=og-ci-simulated-data-gemini + ; API__STORAGE_BUCKET=og-patrick-dev-gemini + ; Gemini API config overrides + ; APP__USE_SUB_SECOND_TIMESTAMPS=True + ; ECHO__BUCKET_NAME=og-yourname-dev-gemini + ; MONGODB__DATABASE_NAME=opsgateway-gemini diff --git a/test/records/ingestion/create_test_hdf.py b/test/records/ingestion/create_test_hdf.py index e98706df..c51ee7c9 100644 --- a/test/records/ingestion/create_test_hdf.py +++ b/test/records/ingestion/create_test_hdf.py @@ -170,6 +170,22 @@ async def create_test_hdf_file( # noqa: C901 pm_201_fe_cam_2_fwhmx.attrs.create("channel_dtype", "scalar") pm_201_fe_cam_2_fwhmx.create_dataset("data", data="FP") + astra_control_mode_string = record.create_group("ASTRA_CONTROL_MODE_STRING") + astra_control_mode_string.attrs["channel_dtype"] = "string" + astra_control_mode_string.attrs["units"] = "NONE" + if required_attributes and "string" in required_attributes: + astra_control_mode_string.create_dataset( + name="data", + shape=(), + data=required_attributes["string"]["data"], + ) + else: + astra_control_mode_string.create_dataset( + name="data", + shape=(), + data="2USERS", + ) + if channel_name and "scalar" in channel_name: false_scalar = record.create_group("FALSE_SCALAR") false_scalar.attrs.create("channel_dtype", "scalar") diff --git a/test/records/ingestion/test_channel.py b/test/records/ingestion/test_channel.py index 1f7d725f..25079ea2 100644 --- a/test/records/ingestion/test_channel.py +++ b/test/records/ingestion/test_channel.py @@ -18,6 +18,7 @@ def create_channel_response(responses, extra=None, channels=False): """ model_response = { "accepted_channels": [ + "ASTRA_CONTROL_MODE_STRING", "CM-202-CVC-WFS", "CM-202-CVC-WFS-COEF", "PM-201-FE-CAM-1", @@ -85,6 +86,7 @@ async def test_channel_checks_success(self, remove_hdf_file): assert await channel_checker.channel_checks() == { "accepted_channels": [ + "ASTRA_CONTROL_MODE_STRING", "CM-202-CVC-WFS", "CM-202-CVC-WFS-COEF", "PM-201-FE-CAM-1", @@ -220,6 +222,16 @@ async def test_channel_dtype_fail(self, remove_hdf_file, altered_channel, respon None, id="Scalar data invalid", ), + pytest.param( + {"string": {"data": 0}}, + [ + { + "ASTRA_CONTROL_MODE_STRING": "data has wrong datatype", + }, + ], + None, + id="String data invalid", + ), pytest.param( {"image": {"data": "missing"}}, [ diff --git a/test/records/ingestion/test_hdf_handler.py b/test/records/ingestion/test_hdf_handler.py index fd811b36..19931cdf 100644 --- a/test/records/ingestion/test_hdf_handler.py +++ b/test/records/ingestion/test_hdf_handler.py @@ -138,6 +138,7 @@ async def test_invalid_formats(self, remove_hdf_file, invalid_timestamp): ["channel_name", "channel_dtype"], [ pytest.param("PM-201-FE-EM", "scalar"), + pytest.param("ASTRA_CONTROL_MODE_STRING", "string"), pytest.param("PM-201-FE-CAM-1", "image"), pytest.param("TS-202-TSM-WFS", "float_image"), pytest.param("PM-201-FE-PD", "waveform"), @@ -176,6 +177,11 @@ async def test_extract_channel_unexpected_group( "scalar", [{"PM-201-FE-EM": "data attribute is missing"}], ), + pytest.param( + "ASTRA_CONTROL_MODE_STRING", + "string", + [{"ASTRA_CONTROL_MODE_STRING": "data attribute is missing"}], + ), pytest.param( "PM-201-FE-CAM-1", "image", diff --git a/test/records/ingestion/test_partial_import.py b/test/records/ingestion/test_partial_import.py index c25d5205..8329b599 100644 --- a/test/records/ingestion/test_partial_import.py +++ b/test/records/ingestion/test_partial_import.py @@ -15,7 +15,7 @@ from operationsgateway_api.src.records.ingestion.partial_import_checks import ( PartialImportChecks, ) -from test.endpoints.conftest import reset_record_storage +from test.conftest import RECORD_ID_TMP from test.records.ingestion.create_test_hdf import create_test_hdf_file CHANNEL_PRESENT_MESSAGE = "Channel is already present in existing record" @@ -281,7 +281,7 @@ async def test_existing_version_with_different_version( # make sure the version hasn't been updated and remains the standard response = test_app.get( - "/records/20200407142816", + f"/records/{RECORD_ID_TMP}", headers={"Authorization": f"Bearer {login_and_get_token}"}, ) assert response.status_code == 200 @@ -295,6 +295,7 @@ async def test_existing_version_with_different_version( { "accepted_channels": [], "rejected_channels": { + "ASTRA_CONTROL_MODE_STRING": CHANNEL_PRESENT_MESSAGE, "CM-202-CVC-WFS": CHANNEL_PRESENT_MESSAGE, "CM-202-CVC-WFS-COEF": CHANNEL_PRESENT_MESSAGE, "PM-201-FE-EM": CHANNEL_PRESENT_MESSAGE, @@ -325,6 +326,7 @@ async def test_existing_version_with_different_version( "PM-201-TJ-CAM-2-FWHMY", ], "rejected_channels": { + "ASTRA_CONTROL_MODE_STRING": CHANNEL_PRESENT_MESSAGE, "CM-202-CVC-WFS": CHANNEL_PRESENT_MESSAGE, "CM-202-CVC-WFS-COEF": CHANNEL_PRESENT_MESSAGE, "PM-201-FE-CAM-2-CENX": CHANNEL_PRESENT_MESSAGE, @@ -347,6 +349,7 @@ async def test_existing_version_with_different_version( "none", { "accepted_channels": [ + "ASTRA_CONTROL_MODE_STRING", "CM-202-CVC-WFS", "CM-202-CVC-WFS-COEF", "PM-201-FE-CAM-1", @@ -403,6 +406,7 @@ async def test_import_channel_checks(self, remove_hdf_file, test_type, response) channels["o"] = channels.pop("PM-201-TJ-CAM-2-FWHMY") channels["p"] = channels.pop("CM-202-CVC-WFS") channels["q"] = channels.pop("CM-202-CVC-WFS-COEF") + channels["r"] = channels.pop("ASTRA_CONTROL_MODE_STRING") partial_import_checker = PartialImportChecks(hdf_tuple[0], stored_record) diff --git a/test/records/test_echo_interface.py b/test/records/test_echo_interface.py index c5715752..bd5a892c 100644 --- a/test/records/test_echo_interface.py +++ b/test/records/test_echo_interface.py @@ -9,6 +9,7 @@ from operationsgateway_api.src.config import Config from operationsgateway_api.src.exceptions import EchoS3Error from operationsgateway_api.src.records.echo_interface import EchoInterface, log +from test.conftest import RECORD_ID_05_0800 @pytest_asyncio.fixture(scope="function") @@ -153,7 +154,8 @@ async def test_cached_bytes(self): wraps=echo_interface._bucket.download_fileobj, ) # First call results in download - object_path = "images/2023/06/05/100000/FE-204-NSO-P1-CAM-1.png" + directories_str = EchoInterface.format_record_id(RECORD_ID_05_0800) + object_path = f"images/{directories_str}/FE-204-NSO-P1-CAM-1.png" await echo_interface.download_file_object(object_path) echo_interface._bucket.download_fileobj.assert_called_once_with( Fileobj=ANY, diff --git a/test/records/test_record_retriever.py b/test/records/test_record_retriever.py index 27ed8ad3..e4c4d2a0 100644 --- a/test/records/test_record_retriever.py +++ b/test/records/test_record_retriever.py @@ -8,6 +8,7 @@ from operationsgateway_api.src.exceptions import FunctionParseError from operationsgateway_api.src.models import PartialRecordModel from operationsgateway_api.src.records.record_retriever import RecordRetriever +from test.conftest import RECORD_ID_05_0800, RECORD_ID_05_1700 class TestRecordRetriever: @@ -18,13 +19,13 @@ class TestRecordRetriever: pytest.param({}, id="No channels"), pytest.param( { - "TS-202-TSM-P1-CAM-2-CENX": {"data": 4.145480878063205}, + "TS-202-TSM-P1-CAM-2-CENX": {"data": 3.0393419803062544}, "CM-202-CVC-SP": { - "waveform_path": "20230605100000/CM-202-CVC-SP.json", + "waveform_path": "20230605080000/CM-202-CVC-SP.json", "metadata": {"x_units": "nm"}, }, "FE-204-NSO-P1-CAM-1": { - "image_path": "20230605100000/FE-204-NSO-P1-CAM-1.png", + "image_path": "20230605080000/FE-204-NSO-P1-CAM-1.png", }, }, id="Channels loaded", @@ -43,7 +44,7 @@ class TestRecordRetriever: ], { "a": { - "data": 0.4145480878063205, + "data": 0.30393419803062544, "metadata": {"channel_dtype": "scalar"}, }, }, @@ -62,11 +63,11 @@ class TestRecordRetriever: ], { "a": { - "data": 0.4145480878063205, + "data": 0.30393419803062544, "metadata": {"channel_dtype": "scalar"}, }, "b": { - "data": -0.880566297127881, + "data": -1.1909440548520571, "metadata": {"channel_dtype": "scalar"}, }, }, @@ -82,7 +83,7 @@ class TestRecordRetriever: ], { "a": { - "thumbnail": "bbb14eb0c14eb14e", + "thumbnail": "bab14eb3d04eb04e", "metadata": {"channel_dtype": "waveform", "x_units": "nm"}, }, }, @@ -97,7 +98,7 @@ class TestRecordRetriever: ], { "a": { - "thumbnail": "ce39b1c74e6c9191", + "thumbnail": "cf38b1d84e07b1b8", "metadata": {"channel_dtype": "waveform", "x_units": "nm"}, }, }, @@ -112,7 +113,7 @@ class TestRecordRetriever: ], { "a": { - "data": 1721.4288093253808, + "data": 1917.3650764729987, "metadata": {"channel_dtype": "scalar"}, }, }, @@ -131,11 +132,11 @@ class TestRecordRetriever: ], { "a": { - "thumbnail": "bbb14eb0c14eb14e", + "thumbnail": "bab14eb3d04eb04e", "metadata": {"channel_dtype": "waveform", "x_units": "nm"}, }, "b": { - "data": 984.4247056536747, + "data": 1180.3609728012923, "metadata": {"channel_dtype": "scalar"}, }, }, @@ -151,7 +152,7 @@ class TestRecordRetriever: ], { "a": { - "thumbnail": "b9c0c6c9a79cccc5", + "thumbnail": "b9ccc52e8463cca7", "metadata": { "channel_dtype": "image", "x_pixel_size": 1936, @@ -190,7 +191,7 @@ class TestRecordRetriever: ], { "a": { - "data": 376.9670147856405, + "data": 802.7587045318617, "metadata": {"channel_dtype": "scalar"}, }, }, @@ -205,7 +206,7 @@ class TestRecordRetriever: ], { "a": { - "data": 156.09, + "data": 303.76, "metadata": {"channel_dtype": "scalar"}, }, }, @@ -224,7 +225,7 @@ class TestRecordRetriever: ], { "a": { - "thumbnail": "b9c0c6c9a79cccc5", + "thumbnail": "b9ccc52e8463cca7", "metadata": { "channel_dtype": "image", "x_pixel_size": 1936, @@ -232,7 +233,7 @@ class TestRecordRetriever: }, }, "b": { - "data": 375.9670147856405, + "data": 801.7587045318617, "metadata": {"channel_dtype": "scalar"}, }, }, @@ -249,7 +250,7 @@ async def test_apply_functions( ): # Use a copy to prevent in place modification of record.channels form persisting # between test executions - record = PartialRecordModel(_id="20230605100000", channels=channels.copy()) + record = PartialRecordModel(_id=RECORD_ID_05_0800, channels=channels.copy()) print(record.channels) record_retriever = RecordRetriever( record=record, @@ -294,7 +295,7 @@ async def test_apply_functions_failure( self, functions: "list[dict[str, str]]", ): - record = PartialRecordModel(_id="20230605100000") + record = PartialRecordModel(_id=RECORD_ID_05_0800) record_retriever = RecordRetriever( record, functions, @@ -308,8 +309,8 @@ async def test_apply_functions_failure( @pytest.mark.asyncio async def test_apply_functions_missing_channel(self): # Note we need a record where not all channels are defined, so not using - # 20230605100000 as above - record = PartialRecordModel(_id="20230604000000") + # 20230605080000 as above + record = PartialRecordModel(_id=RECORD_ID_05_1700) functions = [ {"name": "a", "expression": "TS-202-TSM-P1-CAM-2-CENX / 10"}, {"name": "b", "expression": "a / 10"}, diff --git a/test/test_config_fails.py b/test/test_config_fails.py index be5ae1c2..86c64adf 100644 --- a/test/test_config_fails.py +++ b/test/test_config_fails.py @@ -6,16 +6,6 @@ class TestConfigFails: - def test_failed_config_load(self): - with pytest.raises( - SystemExit, - match=re.escape( - "An error occurred while loading the config data: [Errno 2] No such " - "file or directory: 'random_file.yml'", - ), - ): - APIConfig.load(path="random_file.yml") - def test_invalid_timezone(self): with pytest.raises( SystemExit, diff --git a/util/realistic_data/config.yml.example b/util/realistic_data/config.yml.example index b021877f..46cf57c1 100644 --- a/util/realistic_data/config.yml.example +++ b/util/realistic_data/config.yml.example @@ -9,15 +9,16 @@ script_options: # successful file that ingested e.g. data/2023-06-04T1200.h5 file_to_restart_ingestion: "" database: - connection_uri: mongodb://localhost:27017/opsgateway + connection_uri: mongodb://localhost:27017/opsgateway-epac + # connection_uri: mongodb://localhost:27017/opsgateway-gemini remote_experiments_file_path: /tmp/experiments_for_mongoimport.json test_users_file_path: util/users_for_mongoimport.json -echo: +source: endpoint_url: https://s3.echo.stfc.ac.uk access_key: access_key secret_key: secret_key - simulated_data_bucket: og-ci-simulated-data - storage_bucket: og-developersname-dev + simulated_data_bucket: og-ci-simulated-data-epac + # simulated_data_bucket: og-ci-simulated-data-gemini # Number of HDF files downloaded & ingested in one go page_size: 2 api: @@ -31,6 +32,8 @@ api: # assigned to the instance gunicorn_num_workers: "2" timeout_seconds: 300 + storage_bucket: og-yourname-dev-epac + # storage_bucket: og-yourname-dev-gemini observability: # used to view logs and traces in Elasticsearch run by Platforms & Services environment: dev diff --git a/util/realistic_data/daily_ingestor.py b/util/realistic_data/daily_ingestor.py index d292aa3c..4baa5e29 100644 --- a/util/realistic_data/daily_ingestor.py +++ b/util/realistic_data/daily_ingestor.py @@ -5,7 +5,9 @@ from pprint import pprint from dateutil import tz + from util.realistic_data.ingest.api_client import APIClient +from util.realistic_data.ingest.config import IngestEchoDataConfig def main(): @@ -60,7 +62,12 @@ def main(): pprint([file.name for file in files_to_ingest]) try: - og_api = APIClient(og_api_url) + config = IngestEchoDataConfig() + og_api = APIClient( + url=og_api_url, + username=config.api.username, + password=config.api.password, + ) for file_to_ingest in files_to_ingest: with open(file_to_ingest, "rb") as hdf_file: diff --git a/util/realistic_data/ingest/api_client.py b/util/realistic_data/ingest/api_client.py index a41cc5f0..f6d0c392 100644 --- a/util/realistic_data/ingest/api_client.py +++ b/util/realistic_data/ingest/api_client.py @@ -7,32 +7,33 @@ import requests from requests.exceptions import ConnectionError + from util.realistic_data.ingest.api_starter import APIStarter -from util.realistic_data.ingest.config import Config class APIClient: - def __init__(self, url: str, process=None) -> None: + def __init__(self, url: str, username: str, password: str, process=None) -> None: self.url = url + self.username = username + self.password = password self.access_token, self.refresh_token = self.login() self.process = process def login(self) -> str: # Login to get an access token - print(f"Login as '{Config.config.api.username}' to get access token") + print(f"Login as {self.username!r} to get access token") endpoint = "/login" credentials_json = json.dumps( - { - "username": Config.config.api.username, - "password": Config.config.api.password, - }, + {"username": self.username, "password": self.password}, ) try: response = requests.post( f"{self.url}{endpoint}", data=credentials_json, ) + if response.status_code != 200: + raise RuntimeError(f"{response.status_code}: {response.text}") # strip the first and last characters off the response # (the double quotes that surround it) @@ -51,7 +52,7 @@ def login(self) -> str: ) def refresh(self) -> str: - print(f"Refresh token as '{Config.config.api.username}'") + print(f"Refresh token as {self.username!r}") endpoint = "/refresh" diff --git a/util/realistic_data/ingest/api_starter.py b/util/realistic_data/ingest/api_starter.py index beb772f7..af60f5c0 100644 --- a/util/realistic_data/ingest/api_starter.py +++ b/util/realistic_data/ingest/api_starter.py @@ -7,12 +7,13 @@ import threading from time import sleep -from util.realistic_data.ingest.config import Config +from util.realistic_data.ingest.config import API class APIStarter: - def __init__(self) -> None: - if Config.config.script_options.launch_api: + def __init__(self, launch_api: bool, api_config: API) -> None: + self.api_config = api_config + if launch_api: self.api_alive = False self.process = Popen( [ @@ -20,16 +21,11 @@ def __init__(self) -> None: "run", "gunicorn", "operationsgateway_api.src.main:app", - "--workers", - Config.config.api.gunicorn_num_workers, - "--worker-class", - "uvicorn.workers.UvicornWorker", - "-b", - f"{Config.config.api.host}:{Config.config.api.port}", - "--log-config", - str(Path(Config.config.api.log_config_path)), - "--timeout", - str(Config.config.api.timeout_seconds), + f"--workers={api_config.gunicorn_num_workers}", + "--worker-class=uvicorn.workers.UvicornWorker", + f"--bind={api_config.host}:{api_config.port}", + f"--log-config={Path(api_config.log_config_path)}", + f"--timeout={api_config.timeout_seconds}", ], stdout=PIPE, stderr=PIPE, @@ -62,7 +58,7 @@ def is_api_alive(self) -> None: s = socket.socket(socket.AF_INET, socket.SOCK_STREAM) s.settimeout(2) try: - s.connect((Config.config.api.host, int(Config.config.api.port))) + s.connect((self.api_config.host, int(self.api_config.port))) return True except Exception: return False @@ -77,7 +73,7 @@ def clear_buffers(process: Popen, output=False) -> None: def kill(self) -> None: lsof_output = Popen( - ["lsof", "-ti", f":{Config.config.api.port}"], + ["lsof", "-ti", f":{self.api_config.port}"], stdout=PIPE, stderr=PIPE, ) @@ -97,4 +93,4 @@ def kill(self) -> None: print(f"Killing pid {pid}") os.kill(int(pid), signal.SIGKILL) - print(f"API stopped on {Config.config.api.host}:{Config.config.api.port}") + print(f"API stopped on {self.api_config.host}:{self.api_config.port}") diff --git a/util/realistic_data/ingest/config.py b/util/realistic_data/ingest/config.py index df16b890..52b8874f 100644 --- a/util/realistic_data/ingest/config.py +++ b/util/realistic_data/ingest/config.py @@ -1,10 +1,14 @@ from enum import Enum from pathlib import Path -import sys -from typing import Optional +from typing import Optional, Tuple, Type -from pydantic import BaseModel, SecretStr, ValidationError -import yaml +from pydantic import BaseModel, Field, SecretStr +from pydantic_settings import ( + BaseSettings, + PydanticBaseSettingsSource, + SettingsConfigDict, + YamlConfigSettingsSource, +) class IngestModeEnum(str, Enum): @@ -27,12 +31,11 @@ class Database(BaseModel): test_users_file_path: str -class Echo(BaseModel): +class SourceConfig(BaseModel): endpoint_url: str access_key: SecretStr secret_key: SecretStr simulated_data_bucket: str - storage_bucket: str page_size: int @@ -45,23 +48,42 @@ class API(BaseModel): log_config_path: str gunicorn_num_workers: str timeout_seconds: int - - -class IngestEchoDataConfig(BaseModel): + storage_bucket: str = Field( + description=( + "Bucket used for storage by the API when running. Should correspond to " + "`echo.bucket_name` in the main `config.yaml`. Only used if " + "`script_options.wipe_echo` is True, in which case entire contents of the " + "bucket will be deleted." + ), + examples=["og-yourname-dev"], + ) + + +class IngestEchoDataConfig(BaseSettings): script_options: ScriptOptions database: Database - echo: Echo + source: SourceConfig api: API - @classmethod - def load(cls, path=Path(__file__).parent.parent / "config.yml"): - try: - with open(path, encoding="utf-8") as config_file: - config = yaml.safe_load(config_file) - return cls(**config) - except (IOError, ValidationError, yaml.YAMLError) as e: - sys.exit(f"An error occurred while loading the config data: {e}") + model_config = SettingsConfigDict( + yaml_file=Path(__file__).parent.parent / "config.yml", + env_nested_delimiter="__", + hide_input_in_errors=True, + ) - -class Config: - config = IngestEchoDataConfig.load() + @classmethod + def settings_customise_sources( + cls, + settings_cls: Type[BaseSettings], + init_settings: PydanticBaseSettingsSource, + env_settings: PydanticBaseSettingsSource, + dotenv_settings: PydanticBaseSettingsSource, + file_secret_settings: PydanticBaseSettingsSource, + ) -> Tuple[PydanticBaseSettingsSource, ...]: + return ( + init_settings, + env_settings, + dotenv_settings, + YamlConfigSettingsSource(settings_cls), + file_secret_settings, + ) diff --git a/util/realistic_data/ingest/database_operations.py b/util/realistic_data/ingest/database_operations.py index c90d3f09..cb56d797 100644 --- a/util/realistic_data/ingest/database_operations.py +++ b/util/realistic_data/ingest/database_operations.py @@ -4,18 +4,14 @@ from dateutil import parser from motor.motor_asyncio import AsyncIOMotorClient from pymongo.uri_parser import parse_uri -from util.realistic_data.ingest.config import Config class DatabaseOperations: - def __init__(self) -> None: + def __init__(self, connection_uri: str) -> None: # Async client allows insert_many() to work as an upsert, simplfying # implementation of import_data() - self.client = AsyncIOMotorClient(Config.config.database.connection_uri) - self.db = self.client[self.get_database_name()] - - def get_database_name(self) -> str: - return parse_uri(Config.config.database.connection_uri)["database"] + self.client = AsyncIOMotorClient(connection_uri) + self.db = self.client[parse_uri(connection_uri)["database"]] def drop_collections(self, collection_names: List[str]) -> None: for collection_name in collection_names: diff --git a/util/realistic_data/ingest/s3_interface.py b/util/realistic_data/ingest/s3_interface.py index 4c97afeb..34af5d1a 100644 --- a/util/realistic_data/ingest/s3_interface.py +++ b/util/realistic_data/ingest/s3_interface.py @@ -2,27 +2,35 @@ from time import time import boto3 -from util.realistic_data.ingest.config import Config + +from util.realistic_data.ingest.config import SourceConfig class S3Interface: - def __init__(self) -> None: + def __init__( + self, + source_config: SourceConfig, + storage_bucket: str, + remote_experiments_file_path: str, + ) -> None: + self.source_config = source_config + self.remote_experiments_file_path = remote_experiments_file_path self.resource = boto3.resource( "s3", - endpoint_url=Config.config.echo.endpoint_url, - aws_access_key_id=Config.config.echo.access_key.get_secret_value(), - aws_secret_access_key=Config.config.echo.secret_key.get_secret_value(), + endpoint_url=source_config.endpoint_url, + aws_access_key_id=source_config.access_key.get_secret_value(), + aws_secret_access_key=source_config.secret_key.get_secret_value(), ) self.client = boto3.client( "s3", - endpoint_url=Config.config.echo.endpoint_url, - aws_access_key_id=Config.config.echo.access_key.get_secret_value(), - aws_secret_access_key=Config.config.echo.secret_key.get_secret_value(), + endpoint_url=source_config.endpoint_url, + aws_access_key_id=source_config.access_key.get_secret_value(), + aws_secret_access_key=source_config.secret_key.get_secret_value(), ) self.simulated_data_bucket = self.resource.Bucket( - Config.config.echo.simulated_data_bucket, + source_config.simulated_data_bucket, ) - self.bucket = self.resource.Bucket(Config.config.echo.storage_bucket) + self.bucket = self.resource.Bucket(storage_bucket) def download_manifest_file(self) -> BytesIO: channel_manifest = BytesIO() @@ -43,20 +51,18 @@ def download_experiments(self) -> None: experiments_import.seek(0) print("Downloaded experiments (in format for mongoimport) from S3") - binary_file = open(Config.config.database.remote_experiments_file_path, "wb") + binary_file = open(self.remote_experiments_file_path, "wb") binary_file.write(experiments_import.getvalue()) binary_file.close() - print( - f"Written '{Config.config.database.remote_experiments_file_path}' to file", - ) + print(f"Written {self.remote_experiments_file_path!r} to file") def paginate_hdf_data(self): paginator = self.client.get_paginator("list_objects_v2") return paginator.paginate( - Bucket=Config.config.echo.simulated_data_bucket, + Bucket=self.source_config.simulated_data_bucket, Prefix="data/", - PaginationConfig={"PageSize": Config.config.echo.page_size}, + PaginationConfig={"PageSize": self.source_config.page_size}, ) def download_hdf_file(self, object_key: str): diff --git a/util/realistic_data/ingest_echo_data.py b/util/realistic_data/ingest_echo_data.py index bfb72f41..f8b529b9 100644 --- a/util/realistic_data/ingest_echo_data.py +++ b/util/realistic_data/ingest_echo_data.py @@ -6,102 +6,120 @@ from util.realistic_data.ingest.api_client import APIClient from util.realistic_data.ingest.api_starter import APIStarter -from util.realistic_data.ingest.config import Config +from util.realistic_data.ingest.config import IngestEchoDataConfig from util.realistic_data.ingest.database_operations import DatabaseOperations from util.realistic_data.ingest.s3_interface import S3Interface -def download_and_ingest( - object_names: List[str], - s3_interface: S3Interface, - api: APIClient, -): - download_pool = ThreadPool(int(Config.config.echo.page_size)) - files = download_pool.map(s3_interface.download_hdf_file, object_names) - - ingest_pool = ThreadPool(int(Config.config.api.gunicorn_num_workers)) - ingest_pool.map(api.submit_hdf, files) - - -def main(): - mongodb = DatabaseOperations() - echo = S3Interface() - - if Config.config.script_options.wipe_database: - print("Wiping database") - collection_names = ["channels", "experiments", "records"] - mongodb.drop_collections(collection_names) - - echo.download_experiments() - mongodb.import_data( - Config.config.database.remote_experiments_file_path, - "experiments", - ) - - if Config.config.script_options.wipe_echo: - print(f"Wiping Echo bucket: {Config.config.echo.storage_bucket}") - echo.delete_all() - if Config.config.script_options.import_users: - print("Importing test users to the database") - mongodb.import_data(Config.config.database.test_users_file_path, "users") - - starter = APIStarter() - protocol = "https" if Config.config.api.https else "http" - api_url = f"{protocol}://{Config.config.api.host}:{Config.config.api.port}" - print(f"API started on {api_url}") - - channel_manifest = echo.download_manifest_file() - og_api = APIClient(api_url, starter.process) - og_api.submit_manifest(channel_manifest) - - hdf_page_iterator = echo.paginate_hdf_data() - total_ingestion_start_time = time() - - last_successful_file = Config.config.script_options.file_to_restart_ingestion - ingestion_started = False if last_successful_file else True - - for page in hdf_page_iterator: - object_names = [hdf_file["Key"] for hdf_file in page["Contents"]] - page_start_time = time() - - if last_successful_file in object_names: - print(f"Last successful file found: {last_successful_file}") - ingestion_started = True - - if ingestion_started: - if Config.config.script_options.ingest_mode == "sequential": - for name in object_names: - hdf_file_dict = echo.download_hdf_file(name) - og_api.submit_hdf(hdf_file_dict) - elif Config.config.script_options.ingest_mode == "parallel": - download_and_ingest(object_names, echo, og_api) - else: - print( - f"Last successful file not found in page, skipping: {object_names}", - ) - if og_api.process: - # Flushing stdout buffer so it doesn't become full, causing the script - # to hang - t = threading.Thread( - target=APIStarter.clear_buffers, - args=(og_api.process,), +class DataIngester: + def __init__(self) -> None: + self.config = IngestEchoDataConfig() + + def download_and_ingest( + self, + object_names: List[str], + s3_interface: S3Interface, + api: APIClient, + ) -> None: + download_pool = ThreadPool(int(self.config.source.page_size)) + files = download_pool.map(s3_interface.download_hdf_file, object_names) + + ingest_pool = ThreadPool(int(self.config.api.gunicorn_num_workers)) + ingest_pool.map(api.submit_hdf, files) + + def main(self): + mongodb = DatabaseOperations(connection_uri=self.config.database.connection_uri) + echo = S3Interface( + source_config=self.config.source, + storage_bucket=self.config.api.storage_bucket, + remote_experiments_file_path=self.config.database.remote_experiments_file_path, + ) + + if self.config.script_options.wipe_database: + print("Wiping database") + collection_names = ["channels", "experiments", "records"] + mongodb.drop_collections(collection_names) + + echo.download_experiments() + mongodb.import_data( + self.config.database.remote_experiments_file_path, + "experiments", + ) + + if self.config.script_options.wipe_echo: + print(f"Wiping Echo bucket: {self.config.api.storage_bucket}") + echo.delete_all() + + if self.config.script_options.import_users: + print("Importing test users to the database") + mongodb.import_data(self.config.database.test_users_file_path, "users") + + starter = APIStarter( + launch_api=self.config.script_options.launch_api, + api_config=self.config.api, + ) + protocol = "https" if self.config.api.https else "http" + api_url = f"{protocol}://{self.config.api.host}:{self.config.api.port}" + print(f"API started on {api_url}") + + channel_manifest = echo.download_manifest_file() + og_api = APIClient( + url=api_url, + username=self.config.api.username, + password=self.config.api.password, + process=starter.process, + ) + og_api.submit_manifest(channel_manifest) + + hdf_page_iterator = echo.paginate_hdf_data() + total_ingestion_start_time = time() + + last_successful_file = self.config.script_options.file_to_restart_ingestion + ingestion_started = False if last_successful_file else True + + for page in hdf_page_iterator: + object_names = [hdf_file["Key"] for hdf_file in page["Contents"]] + page_start_time = time() + + if last_successful_file in object_names: + print(f"Last successful file found: {last_successful_file}") + ingestion_started = True + + if ingestion_started: + if self.config.script_options.ingest_mode == "sequential": + for name in object_names: + hdf_file_dict = echo.download_hdf_file(name) + og_api.submit_hdf(hdf_file_dict) + elif self.config.script_options.ingest_mode == "parallel": + self.download_and_ingest(object_names, echo, og_api) + else: + print( + f"Last successful file not found in page, skipping: {object_names}", ) - t.start() + if og_api.process: + # Flushing stdout buffer so it doesn't become full, + # causing the script to hang + t = threading.Thread( + target=APIStarter.clear_buffers, + args=(og_api.process,), + ) + t.start() - page_end_time = time() - page_duration = page_end_time - page_start_time - print(f"Page ingestion duration: {page_duration:0.2f} seconds") - og_api.refresh() + page_end_time = time() + page_duration = page_end_time - page_start_time + print(f"Page ingestion duration: {page_duration:0.2f} seconds") + og_api.refresh() - total_ingestion_end_time = time() - ingestion_duration = total_ingestion_end_time - total_ingestion_start_time - print(f"Total ingestion duration: {ingestion_duration:0.2f} seconds") + total_ingestion_end_time = time() + ingestion_duration = total_ingestion_end_time - total_ingestion_start_time + print(f"Total ingestion duration: {ingestion_duration:0.2f} seconds") - if Config.config.script_options.launch_api: - starter.kill() + if self.config.script_options.launch_api: + starter.kill() if __name__ == "__main__": - main() + data_ingester = DataIngester() + data_ingester.main() # Script doesn't always exit once it's finished, this ensures it does os._exit(0) From 09d615f72c1c94cd804b3a0099305c89820267a2 Mon Sep 17 00:00:00 2001 From: Patrick Austin Date: Thu, 7 May 2026 16:01:04 +0000 Subject: [PATCH 37/52] Remove observability section from .github/ci_ingest_echo_config.yml --- .github/ci_ingest_echo_config.yml | 4 ---- 1 file changed, 4 deletions(-) diff --git a/.github/ci_ingest_echo_config.yml b/.github/ci_ingest_echo_config.yml index 7f848840..253ecf64 100644 --- a/.github/ci_ingest_echo_config.yml +++ b/.github/ci_ingest_echo_config.yml @@ -27,7 +27,3 @@ api: gunicorn_num_workers: "1" timeout_seconds: 1000 storage_bucket: og-bucket -observability: - # used to view logs and traces in Elasticsearch run by Platforms & Services - environment: dev - secret_key: test From b61df7fe11dc76639f731eaa399103be22249004 Mon Sep 17 00:00:00 2001 From: Patrick Austin Date: Fri, 8 May 2026 08:08:43 +0000 Subject: [PATCH 38/52] Correct name of source buckets, sub_second setting in ci.yml --- .github/workflows/ci.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 838e481c..ceaa042b 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -115,7 +115,7 @@ jobs: # Ingest config: SOURCE__ACCESS_KEY: ${{secrets.ECHO_S3_ACCESS_KEY}} SOURCE__SECRET_KEY: ${{secrets.ECHO_S3_SECRET_KEY}} - SOURCE__SIMULATED_DATA_BUCKET: og-simulated-data-epac + SOURCE__SIMULATED_DATA_BUCKET: og-ci-simulated-data-epac # Run EPAC tests session, saves and uploads a coverage report to codecov - name: Run Nox tests session @@ -231,11 +231,11 @@ jobs: run: poetry run python util/realistic_data/ingest_echo_data.py env: # App config: - APP__USE_SUB_SECOND_TIMESTAMPS: False + APP__USE_SUB_SECOND_TIMESTAMPS: True # Ingest config: SOURCE__ACCESS_KEY: ${{secrets.ECHO_S3_ACCESS_KEY}} SOURCE__SECRET_KEY: ${{secrets.ECHO_S3_SECRET_KEY}} - SOURCE__SIMULATED_DATA_BUCKET: og-simulated-data-gemini + SOURCE__SIMULATED_DATA_BUCKET: og-ci-simulated-data-gemini # Run Gemini tests session, print coverage but do not upload - name: Run Nox tests session From a56e4fd8ff508dced1c89b593e8dc9c4a2365fe1 Mon Sep 17 00:00:00 2001 From: Patrick Austin Date: Fri, 8 May 2026 09:21:04 +0000 Subject: [PATCH 39/52] Dump logs on CI ingest failure and add retry login during ingest --- .github/workflows/ci.yml | 8 ++++++++ util/realistic_data/ingest/api_client.py | 12 ++++++++++-- 2 files changed, 18 insertions(+), 2 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index ceaa042b..fe94d798 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -117,6 +117,10 @@ jobs: SOURCE__SECRET_KEY: ${{secrets.ECHO_S3_SECRET_KEY}} SOURCE__SIMULATED_DATA_BUCKET: og-ci-simulated-data-epac + - name: Dump logs + if: ${{ failure() }} + run: cat operationsgateway-api.log + # Run EPAC tests session, saves and uploads a coverage report to codecov - name: Run Nox tests session run: nox -s tests -- --cov=operationsgateway_api --cov-report=xml @@ -237,6 +241,10 @@ jobs: SOURCE__SECRET_KEY: ${{secrets.ECHO_S3_SECRET_KEY}} SOURCE__SIMULATED_DATA_BUCKET: og-ci-simulated-data-gemini + - name: Dump logs + if: ${{ failure() }} + run: cat operationsgateway-api.log + # Run Gemini tests session, print coverage but do not upload - name: Run Nox tests session run: nox -s tests -- --cov=operationsgateway_api --cov-report=term-missing diff --git a/util/realistic_data/ingest/api_client.py b/util/realistic_data/ingest/api_client.py index f6d0c392..859bfbde 100644 --- a/util/realistic_data/ingest/api_client.py +++ b/util/realistic_data/ingest/api_client.py @@ -2,7 +2,7 @@ import json from pprint import pprint import threading -from time import time +from time import sleep, time from typing import Dict import requests @@ -13,13 +13,14 @@ class APIClient: def __init__(self, url: str, username: str, password: str, process=None) -> None: + self.retries = 3 self.url = url self.username = username self.password = password self.access_token, self.refresh_token = self.login() self.process = process - def login(self) -> str: + def login(self) -> tuple[str, str]: # Login to get an access token print(f"Login as {self.username!r} to get access token") @@ -45,11 +46,18 @@ def login(self) -> str: return access_token, refresh_token except ConnectionError: print(f"Cannot connect with API at {self.url} for {endpoint}") + if self.retries > 0: + self.retries -= 1 + sleep(10) + return self.login() + else: + raise except requests.exceptions.InvalidSchema: print( "Invalid schema when logging in with requests. Have you added" " http/https to the start of the API URL?", ) + raise def refresh(self) -> str: print(f"Refresh token as {self.username!r}") From 1ea80a1bd2ca6bf85e82e2b2740c536963cf8a7f Mon Sep 17 00:00:00 2001 From: Patrick Austin Date: Fri, 8 May 2026 09:26:32 +0000 Subject: [PATCH 40/52] Revert accidental change to bucket name in tests_epac job in ci.yml --- .github/workflows/ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index fe94d798..f7d0f60a 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -79,7 +79,7 @@ jobs: export AWS_ACCESS_KEY_ID=minioadmin export AWS_SECRET_ACCESS_KEY=minioadmin export AWS_EC2_METADATA_DISABLED=true - aws --endpoint-url http://127.0.0.1:9000/ s3 mb s3://og-test-epac + aws --endpoint-url http://127.0.0.1:9000/ s3 mb s3://og-actions-test - name: Move CI config.yml to correct place run: cp .github/ci_config.yml operationsgateway_api/config.yml From 83d2f16729d87f7219ed62df59893419c929929a Mon Sep 17 00:00:00 2001 From: Patrick Austin Date: Tue, 12 May 2026 13:02:27 +0000 Subject: [PATCH 41/52] Split pytest.ini.example into pytest_epac.ini.example and pytest_gemini.ini.example --- README.md | 6 +++--- test/pytest.ini.example | 20 -------------------- test/pytest_epac.ini.example | 11 +++++++++++ test/pytest_gemini.ini.example | 11 +++++++++++ 4 files changed, 25 insertions(+), 23 deletions(-) delete mode 100644 test/pytest.ini.example create mode 100644 test/pytest_epac.ini.example create mode 100644 test/pytest_gemini.ini.example diff --git a/README.md b/README.md index c81b3232..6b161094 100644 --- a/README.md +++ b/README.md @@ -166,13 +166,13 @@ Alternatively, you can use the Postman requests in this repo. This gives a more While initially developed for a single facility (EPAC), the API is now designed to support multiple facilities with specific anticipated behaviour. This behaviour is controlled by configuration settings. These settings should be applied both during ingest of test data and while the tests are run. For ease, there is a `"session"` scoped fixture which ingests the test data, but only if the database is empty. This means when developing locally, the first execution of the tests may hang for around 4 minutes while ingestion occurs, but subsequent executions will start testing immediately. -By default, the "usual" location of the configuration at [operationsgateway_api/config.yml](operationsgateway_api/config.yml) will apply, but pytest can be configured to override settings using the `pytest-env` plugin. +By default, the "usual" location of the configuration at [operationsgateway_api/config.yml](operationsgateway_api/config.yml) will apply (as it does when running the API locally). However, pytest can be configured to override these settings using the `pytest-env` plugin. ### pytest.ini -To support test suites for EPAC and Gemini style data, [test/pytest.ini.example](test/pytest.ini.example) contains sections for both facilities. This file can be copied to `test/pytest_epac.ini` and `test/pytest_gemini.ini` with the appropriate settings. +To support test suites for EPAC and Gemini style data, [test/pytest_epac.ini.example](test/pytest_epac.ini.example) and [test/pytest_gemini.ini.example](test/pytest_gemini.ini.example) should be copied to `test/pytest_epac.ini` and `test/pytest_gemini.ini` respectively. While the majority of the settings can then be used as is, it will also be necessary to choose bucket name(s) (i.e. replace `yourname`) and create a bucket and Mongo database with the corresponding name(s) before the tests will run. As mentioned above, it is not necessary to manually ingest the data if the database starts empty. -It will also be necessary to choose bucket name(s) (i.e. replace `yourname`) and create a bucket and Mongo database with the corresponding name(s) before the tests will run. +Note that because of how [Pydantic parses environment variables](https://pydantic.dev/docs/validation/latest/concepts/pydantic_settings/#parsing-environment-variable-values), settings in the `env` section of `pytest.ini` will always take precedence over the `config.yml`. If one of the env settings is commented out (`;`), or removed, then whatever setting is in `config.yml` will be used as the next highest priority source. Conversely, if a new field is added the env, this will then override the corresponding setting in `config.yml`. There are therefore multiple ways to make config changes for the tests, and the appropriate method to use will depend on the circumstances. ### nox diff --git a/test/pytest.ini.example b/test/pytest.ini.example deleted file mode 100644 index b1783380..00000000 --- a/test/pytest.ini.example +++ /dev/null @@ -1,20 +0,0 @@ -[pytest] -asyncio_mode=auto -env = - ; EPAC ingest config overrides - ; DATABASE__CONNECTION_URI=mongodb://localhost:27017/opsgateway-epac - ; SOURCE__SIMULATED_DATA_BUCKET=og-ci-simulated-data-epac - ; API__STORAGE_BUCKET=og-patrick-dev-epac - ; EPAC API config overrides - ; APP__USE_SUB_SECOND_TIMESTAMPS=False - ; ECHO__BUCKET_NAME=og-yourname-dev-epac - ; MONGODB__DATABASE_NAME=opsgateway-epac - - ; Gemini ingest config overrides - ; DATABASE__CONNECTION_URI=mongodb://localhost:27017/opsgateway-gemini - ; SOURCE__SIMULATED_DATA_BUCKET=og-ci-simulated-data-gemini - ; API__STORAGE_BUCKET=og-patrick-dev-gemini - ; Gemini API config overrides - ; APP__USE_SUB_SECOND_TIMESTAMPS=True - ; ECHO__BUCKET_NAME=og-yourname-dev-gemini - ; MONGODB__DATABASE_NAME=opsgateway-gemini diff --git a/test/pytest_epac.ini.example b/test/pytest_epac.ini.example new file mode 100644 index 00000000..c9a7f30a --- /dev/null +++ b/test/pytest_epac.ini.example @@ -0,0 +1,11 @@ +[pytest] +asyncio_mode=auto +env = + ; EPAC ingest config overrides + DATABASE__CONNECTION_URI=mongodb://localhost:27017/opsgateway-epac + SOURCE__SIMULATED_DATA_BUCKET=og-ci-simulated-data-epac + API__STORAGE_BUCKET=og-yourname-dev-epac + ; EPAC API config overrides + APP__USE_SUB_SECOND_TIMESTAMPS=False + ECHO__BUCKET_NAME=og-yourname-dev-epac + MONGODB__DATABASE_NAME=opsgateway-epac diff --git a/test/pytest_gemini.ini.example b/test/pytest_gemini.ini.example new file mode 100644 index 00000000..d84b40c3 --- /dev/null +++ b/test/pytest_gemini.ini.example @@ -0,0 +1,11 @@ +[pytest] +asyncio_mode=auto +env = + ; Gemini ingest config overrides + DATABASE__CONNECTION_URI=mongodb://localhost:27017/opsgateway-gemini + SOURCE__SIMULATED_DATA_BUCKET=og-ci-simulated-data-gemini + API__STORAGE_BUCKET=og-yourname-dev-gemini + ; Gemini API config overrides + APP__USE_SUB_SECOND_TIMESTAMPS=True + ECHO__BUCKET_NAME=og-yourname-dev-gemini + MONGODB__DATABASE_NAME=opsgateway-gemini From 67f50f94823bbcd21744727ad765363df8032fc9 Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Mon, 18 May 2026 09:59:37 +0000 Subject: [PATCH 42/52] Adding strings to export and recent_sample --- .../src/records/export_handler.py | 21 +++++++++++++------ operationsgateway_api/src/records/record.py | 20 +++++++++++------- operationsgateway_api/src/routes/export.py | 5 +++++ 3 files changed, 32 insertions(+), 14 deletions(-) diff --git a/operationsgateway_api/src/records/export_handler.py b/operationsgateway_api/src/records/export_handler.py index c9b511ca..79e8f698 100644 --- a/operationsgateway_api/src/records/export_handler.py +++ b/operationsgateway_api/src/records/export_handler.py @@ -39,6 +39,7 @@ def __init__( colourmap_name: str, functions: "list[dict[str, str]]", export_scalars: bool, + export_strings: bool, export_images: bool, export_float_images: bool, export_waveform_csvs: bool, @@ -57,6 +58,7 @@ def __init__( self.limit_bit_depth = limit_bit_depth self.colourmap_name = colourmap_name self.export_scalars = export_scalars + self.export_strings = export_strings self.export_images = export_images self.export_float_images = export_float_images self.export_waveform_csvs = export_waveform_csvs @@ -299,14 +301,21 @@ async def _process_data_channel( elif channel_type == "vector": log.info("Channel %s is a vector", channel_name) await self._add_vector_to_zip(channels, record_id, channel_name) - # process a scalar channel + # process a scalar or string channel + # process a scalar or string channel else: - log.info("Channel %s is a scalar", channel_name) - if channel_name in channels and channels[channel_name].data is not None: + log.info("Channel %s is a %s", channel_name, channel_type) + if channel_type == "scalar" and not self.export_scalars: + return line + if channel_type == "string" and not self.export_strings: + return line + if channel_name in channels and channels[ + channel_name].data is not None: value = channels[channel_name].data else: value = "" - line = self._add_value_to_csv_line(line=line, value=value, verbose=True) + line = self._add_value_to_csv_line(line=line, value=value, + verbose=True) return line async def _add_image_to_zip( @@ -502,7 +511,7 @@ def _add_main_csv_file_to_zip(self): If other files have been exported and therefore a zip file is being prepared for export then add the CSV file to the zip file. """ - if self.export_scalars: + if self.export_scalars or self.export_strings: if ( len(self.zip_file.infolist()) > 0 and len(self.main_csv_file_in_memory.getvalue()) > 0 @@ -534,7 +543,7 @@ def get_export_file_bytes(self) -> Union[BytesIO, StringIO]: if len(self.zip_file.infolist()) > 0: return self.zip_file_in_memory else: - if self.export_scalars: + if self.export_scalars or self.export_strings: return self.main_csv_file_in_memory else: raise ExportError("Nothing to export") diff --git a/operationsgateway_api/src/records/record.py b/operationsgateway_api/src/records/record.py index 793e201f..a398a727 100644 --- a/operationsgateway_api/src/records/record.py +++ b/operationsgateway_api/src/records/record.py @@ -246,20 +246,24 @@ async def get_date_of_channel_data( piece of data that exists for a particular channel. If no data can be found, a `ChannelSummaryError` will be raised """ - channel_exist_condition = {f"channels.{channel_name}": {"$exists": True}} + channel_exist_condition = { + f"channels.{channel_name}": {"$exists": True}, + "metadata.timestamp": {"$exists": True}, + } + data = await MongoDBInterface.find_one( "records", filter_=channel_exist_condition, sort=direction, - projection=["metadata.timestamp"], + projection={"metadata.timestamp": 1}, ) - if data: + if data and data.get("metadata", {}).get("timestamp"): return data["metadata"]["timestamp"] - else: - raise ChannelSummaryError( - f"There is no timestamp data for {channel_name}", - ) + + raise ChannelSummaryError( + f"There is no timestamp data for {channel_name}", + ) @staticmethod async def get_recent_channel_values( @@ -294,7 +298,7 @@ async def get_recent_channel_values( channel = record.channels[channel_name] data = None - if channel.metadata.channel_dtype == "scalar": + if channel.metadata.channel_dtype in {"scalar", "string"}: data = channel.data elif channel.metadata.channel_dtype == "image": thumbnail_bytes = FalseColourHandler.apply_false_colour_to_b64_img( diff --git a/operationsgateway_api/src/routes/export.py b/operationsgateway_api/src/routes/export.py index 0df9827a..dbd49221 100644 --- a/operationsgateway_api/src/routes/export.py +++ b/operationsgateway_api/src/routes/export.py @@ -92,6 +92,10 @@ async def export_records( True, description="Whether to export the scalar values from the main data table", ), + export_strings: Optional[bool] = Query( + True, + description="Whether to export string values from the main data table", + ), export_images: Optional[bool] = Query( True, description="Whether to export the images for image channels", @@ -167,6 +171,7 @@ async def export_records( colourmap_name, functions, export_scalars, + export_strings, export_images, export_float_images, export_waveform_csvs, From 024456b671f92b2adcd3eff1e883e3bfbb81aba0 Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Mon, 18 May 2026 12:45:05 +0000 Subject: [PATCH 43/52] Adding strings to export tests --- .../src/records/export_handler.py | 6 ++--- test/endpoints/test_export.py | 25 +++++++++++++++++++ test/records/test_export_handler.py | 3 +++ 3 files changed, 30 insertions(+), 4 deletions(-) diff --git a/operationsgateway_api/src/records/export_handler.py b/operationsgateway_api/src/records/export_handler.py index 79e8f698..2507ccb9 100644 --- a/operationsgateway_api/src/records/export_handler.py +++ b/operationsgateway_api/src/records/export_handler.py @@ -309,13 +309,11 @@ async def _process_data_channel( return line if channel_type == "string" and not self.export_strings: return line - if channel_name in channels and channels[ - channel_name].data is not None: + if channel_name in channels and channels[channel_name].data is not None: value = channels[channel_name].data else: value = "" - line = self._add_value_to_csv_line(line=line, value=value, - verbose=True) + line = self._add_value_to_csv_line(line=line, value=value, verbose=True) return line async def _add_image_to_zip( diff --git a/test/endpoints/test_export.py b/test/endpoints/test_export.py index 4d2feda5..9e8a9d66 100644 --- a/test/endpoints/test_export.py +++ b/test/endpoints/test_export.py @@ -34,6 +34,7 @@ class TestExport: "export_waveform_csvs", "export_images", "export_scalars", + "export_strings", "export_float_images", "export_vector_images", "export_vector_csvs", @@ -70,6 +71,7 @@ class TestExport: None, None, None, + None, [], # functions f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv", f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv", @@ -97,6 +99,7 @@ class TestExport: None, None, None, + None, [], # functions f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv", f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}_desc.csv", @@ -124,6 +127,7 @@ class TestExport: None, None, None, + None, [], # functions f"{RECORD_ID_05_0800}.csv", f"export/{RECORD_ID_05_0800}.csv", @@ -152,6 +156,7 @@ class TestExport: None, None, None, + None, [], # functions f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.zip", None, @@ -194,6 +199,7 @@ class TestExport: None, None, None, + None, [], # functions f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_1700}.csv", f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_1700}.csv", @@ -219,6 +225,7 @@ class TestExport: None, None, None, + None, 5, 15, "jet_r", @@ -258,6 +265,7 @@ class TestExport: None, None, None, + None, [], # functions f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.zip", None, @@ -301,6 +309,7 @@ class TestExport: None, None, None, + None, [], # functions f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.zip", None, @@ -344,6 +353,7 @@ class TestExport: None, None, None, + None, [], # functions f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.zip", None, @@ -376,6 +386,7 @@ class TestExport: None, None, False, # export_scalars - don't export the main CSV file + False, # export_strings None, None, None, @@ -414,6 +425,7 @@ class TestExport: None, None, None, + None, [], # functions f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.zip", None, @@ -443,6 +455,7 @@ class TestExport: None, None, None, + None, True, True, True, @@ -478,6 +491,7 @@ class TestExport: None, None, None, + None, False, # export_float_images True, # export_vector_images True, # export_vector_csvs @@ -519,6 +533,7 @@ class TestExport: None, None, None, + None, [], # functions f"{RECORD_ID_05_0800}.csv", f"export/{RECORD_ID_05_0800}.csv", @@ -547,6 +562,7 @@ class TestExport: None, None, None, + None, [], # functions f"{RECORD_ID_05_0800}.zip", None, @@ -572,6 +588,7 @@ class TestExport: None, None, None, + None, [], # functions f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}_FE-204-PSO-EM.csv", f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}_FE-204-PSO-EM.csv", @@ -594,6 +611,7 @@ class TestExport: None, None, None, + None, [], # functions f"{RECORD_ID_05_0800}_FE-204-PSO-CAM-1.zip", None, @@ -618,6 +636,7 @@ class TestExport: None, None, None, + None, [], # functions f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}_ID.csv", f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}_ID.csv", @@ -647,6 +666,7 @@ class TestExport: None, None, None, + None, [], # functions f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv", f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}_incl_id.csv", @@ -678,6 +698,7 @@ class TestExport: None, None, None, + None, [ {"name": "scalar", "expression": "FE-204-PSO-EM + 1"}, {"name": "waveform", "expression": "FE-204-PSO-P1-SP + (1 - 1)"}, @@ -729,6 +750,7 @@ class TestExport: None, None, None, + None, [ {"name": "scalar", "expression": "FE-204-PSO-EM + 1"}, {"name": "waveform", "expression": "FE-204-PSO-P1-SP + (1 - 1)"}, @@ -775,6 +797,7 @@ class TestExport: None, None, None, + None, 5, 15, "jet_r", @@ -810,6 +833,7 @@ def test_csv_export( export_waveform_csvs, export_images, export_scalars, + export_strings, export_float_images: bool, export_vector_images: bool, export_vector_csvs: bool, @@ -844,6 +868,7 @@ def test_csv_export( ) TestExport.compile_get_params(get_params, "export_images", export_images) TestExport.compile_get_params(get_params, "export_scalars", export_scalars) + TestExport.compile_get_params(get_params, "export_strings", export_strings) TestExport.compile_get_params( get_params, "export_float_images", diff --git a/test/records/test_export_handler.py b/test/records/test_export_handler.py index 9aacfd73..1f16d5a6 100644 --- a/test/records/test_export_handler.py +++ b/test/records/test_export_handler.py @@ -53,6 +53,7 @@ async def test_process_projection(self): False, False, False, + False, ) assert await export_handler._process_projection(None, {}, proj) == "" @@ -81,6 +82,7 @@ async def test_process_channel_empty_channels(self, channel_name: str): colourmap_name="viridis", functions=[], export_scalars=True, + export_strings=True, export_images=True, export_float_images=True, export_waveform_images=True, @@ -117,6 +119,7 @@ async def test_process_channel_missing_objects(self, channel_name: str): colourmap_name="viridis", functions=[], export_scalars=True, + export_strings=True, export_images=True, export_float_images=True, export_waveform_images=True, From d7368e1c678502169bceb756582ffbfb40830168 Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Mon, 18 May 2026 12:45:43 +0000 Subject: [PATCH 44/52] Adding strings to export tests --- test/endpoints/test_export.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/test/endpoints/test_export.py b/test/endpoints/test_export.py index 9e8a9d66..19d114bf 100644 --- a/test/endpoints/test_export.py +++ b/test/endpoints/test_export.py @@ -386,7 +386,7 @@ class TestExport: None, None, False, # export_scalars - don't export the main CSV file - False, # export_strings + False, # export_strings None, None, None, From d5f979af2a50b12085cb66e6ad7c8891fdd3a024 Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Wed, 20 May 2026 10:06:39 +0000 Subject: [PATCH 45/52] Adding user office authentication --- operationsgateway_api/config.yml.example | 2 + .../src/auth/authentication.py | 68 +++++++++++++++++++ operationsgateway_api/src/config.py | 1 + operationsgateway_api/src/routes/auth.py | 23 ++++--- operationsgateway_api/src/users/user.py | 3 +- 5 files changed, 87 insertions(+), 10 deletions(-) diff --git a/operationsgateway_api/config.yml.example b/operationsgateway_api/config.yml.example index bd6a1a9a..9bf61a40 100644 --- a/operationsgateway_api/config.yml.example +++ b/operationsgateway_api/config.yml.example @@ -8,6 +8,7 @@ app: url_prefix: "" maintenance_file: operationsgateway_api/maintenance.json.example scheduled_maintenance_file: operationsgateway_api/scheduled_maintenance.json.example + use_sub_second_timestamps: false images: # Thumbnail sizes should only ever be two element lists, of a x, y resolution thumbnail_size: [50, 50] @@ -49,6 +50,7 @@ auth: refresh_token_validity_days: 7 fedid_server_url: ldap://fed.cclrc.ac.uk:389 fedid_server_ldap_realm: FED.CCLRC.AC.UK + allow_user_office_login: false oidc_providers: keycloak: display_name: A name # This gets displayed on the FE as an auth option diff --git a/operationsgateway_api/src/auth/authentication.py b/operationsgateway_api/src/auth/authentication.py index ce5f88c7..cd19862c 100644 --- a/operationsgateway_api/src/auth/authentication.py +++ b/operationsgateway_api/src/auth/authentication.py @@ -3,6 +3,7 @@ import socket import ldap +import requests from starlette.responses import JSONResponse from operationsgateway_api.src.auth.jwt_handler import JwtHandler @@ -160,3 +161,70 @@ def create_tokens_response(user_model): ) return response + + @staticmethod + def do_user_office_auth(login_details: LoginDetailsModel) -> str: + """ + Authenticate a User Office user. + User enters email + password. + User Office returns userId + The returned userId is used to find the user in Mongo. + """ + username = login_details.username + password = login_details.password + + log.debug("Doing User Office auth for '%s'", username) + + login_url = "https://api.facilities.rl.ac.uk/users-service/v2/sessions" + + try: + response = requests.post( + login_url, + json={ + "username": username, + "password": password, + }, + headers={ + "Accept": "application/json", + "Content-Type": "application/json", + }, + timeout=10, + ) + + if response.status_code in (401, 403): + log.info("Invalid User Office username or password for '%s'", username) + raise UnauthorisedError() + + if response.status_code != 201: + log.error( + "Unexpected User Office auth response for '%s': %s %s", + username, + response.status_code, + response.text, + ) + response.raise_for_status() + raise AuthServerError() + + login_response = response.json() + user_id = login_response.get("userId") + + if not user_id: + log.error("User Office auth response did not contain userId") + raise AuthServerError() + + log.info( + "User Office login successful for '%s', userId '%s'", + username, + user_id, + ) + + return user_id + + except UnauthorisedError: + raise + except requests.exceptions.RequestException as exc: + log.exception("Problem with User Office auth service") + raise AuthServerError() from exc + except ValueError as exc: + log.exception("Invalid JSON response from User Office auth service") + raise AuthServerError() from exc diff --git a/operationsgateway_api/src/config.py b/operationsgateway_api/src/config.py index 3ec1c144..459e29fe 100644 --- a/operationsgateway_api/src/config.py +++ b/operationsgateway_api/src/config.py @@ -112,6 +112,7 @@ class AuthConfig(BaseModel): refresh_token_validity_days: StrictInt fedid_server_url: StrictStr fedid_server_ldap_realm: StrictStr + allow_user_office_login: StrictBool oidc_providers: dict[StrictStr, OidcProviderConfig] = {} diff --git a/operationsgateway_api/src/routes/auth.py b/operationsgateway_api/src/routes/auth.py index a594dea6..3db106a4 100644 --- a/operationsgateway_api/src/routes/auth.py +++ b/operationsgateway_api/src/routes/auth.py @@ -58,17 +58,22 @@ async def login( """ log.info("Login request for '%s'", login_details.username) - # authenticate the user - user_model = await User.get_user(login_details.username) - log.debug("user_model: %s", user_model) + username = login_details.username + + if Config.config.auth.allow_user_office_login and "@" in username: + user_id = Authentication.do_user_office_auth(login_details) + + # User Office returns the ICAT/User Office user id. + user_model = await User.get_user(user_id) + else: + user_model = await User.get_user(username) + + authentication = Authentication(login_details, user_model) + authentication.authenticate() - authentication = Authentication(login_details, user_model) - authentication.authenticate() + log.debug("user_model: %s", user_model) - log.info( - "Creating refresh token for '%s':", - login_details.username, - ) + log.info("Creating refresh token for '%s':", user_model.username) response = Authentication.create_tokens_response(user_model) diff --git a/operationsgateway_api/src/users/user.py b/operationsgateway_api/src/users/user.py index 2c66484f..4d185b25 100644 --- a/operationsgateway_api/src/users/user.py +++ b/operationsgateway_api/src/users/user.py @@ -26,13 +26,14 @@ class User: auth_type_list = [ "local", "FedID", + "user_office", ] @staticmethod async def get_user(username: str) -> UserModel: """ Get the document for the user specified from the database and populate a - UserModel with the detals + UserModel with the details :return: the populated UserModel """ user_data = await MongoDBInterface.find_one( From 3dfbc7bb52a27d6430b0c2d1c02de519bacb41c5 Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Wed, 20 May 2026 11:19:25 +0000 Subject: [PATCH 46/52] update ci config --- .github/ci_config.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/ci_config.yml b/.github/ci_config.yml index 30c824d9..a7a81e35 100644 --- a/.github/ci_config.yml +++ b/.github/ci_config.yml @@ -40,6 +40,7 @@ auth: refresh_token_validity_days: 7 fedid_server_url: ldap://fed.cclrc.ac.uk:389 fedid_server_ldap_realm: FED.CCLRC.AC.UK + allow_user_office_login: false experiments: user_office_rest_api_url: https://devapi.facilities.rl.ac.uk/users-service/v1 scheduler_wsdl_url: https://devapis.facilities.rl.ac.uk/ws/ScheduleWebService?wsdl From 7e07d3d13230e913990bd5b8ba0fc674ad9689a7 Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Wed, 3 Jun 2026 15:58:41 +0000 Subject: [PATCH 47/52] Adding tests for string types --- test/endpoints/test_channel_summary.py | 33 +++++++++++++++++++ test/endpoints/test_export.py | 29 ++++++++++++++++ test/endpoints/test_get_records.py | 22 +++++++++++++ ...230605080300_ASTRA_CONTROL_MODE_STRING.csv | 3 ++ 4 files changed, 87 insertions(+) create mode 100644 test/export/20230605080000_to_20230605080300_ASTRA_CONTROL_MODE_STRING.csv diff --git a/test/endpoints/test_channel_summary.py b/test/endpoints/test_channel_summary.py index 8f568cd9..4e41f674 100644 --- a/test/endpoints/test_channel_summary.py +++ b/test/endpoints/test_channel_summary.py @@ -52,6 +52,39 @@ def test_valid_scalar_channel_summary( assert test_response.status_code == 200 assert test_response.json() == expected_summary + @pytest.mark.parametrize( + "channel_name, expected_summary", + [ + pytest.param( + "ASTRA_CONTROL_MODE_STRING", + { + "first_date": DATETIME_STR_05_0800, + "most_recent_date": DATETIME_STR_06_1200, + "recent_sample": [ + {DATETIME_STR_06_1200: "2USERS"}, + {DATETIME_STR_05_0803: "2USERS"}, + {DATETIME_STR_05_0800: "2USERS"}, + ], + }, + id="String channel summary", + ), + ], + ) + def test_valid_string_channel_summary( + self, + test_app: TestClient, + login_and_get_token, + channel_name, + expected_summary, + ): + test_response = test_app.get( + f"/channels/summary/{channel_name}", + headers={"Authorization": f"Bearer {login_and_get_token}"}, + ) + + assert test_response.status_code == 200 + assert test_response.json() == expected_summary + @pytest.mark.parametrize( "channel_name, expected_summary, use_preferred_colourmap", [ diff --git a/test/endpoints/test_export.py b/test/endpoints/test_export.py index 19d114bf..3a27bef5 100644 --- a/test/endpoints/test_export.py +++ b/test/endpoints/test_export.py @@ -818,6 +818,35 @@ class TestExport: "with functions defined but not included in projections" ), ), + pytest.param( + {"_id": {"$in": [RECORD_ID_05_0800, RECORD_ID_05_0803]}}, + 0, + 10, + "metadata.shotnum ASC", + [ + "metadata.shotnum", + "metadata.timestamp", + "metadata.epac_ops_data_version", + "channels.ASTRA_CONTROL_MODE_STRING.data", + ], + None, + None, + None, + None, + True, # export_strings + None, + None, + None, + None, + None, + None, + [], # functions + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}_ASTRA_CONTROL_MODE_STRING.csv", + f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}_ASTRA_CONTROL_MODE_STRING.csv", + None, + marks=MARK_GEMINI_TEST, + id="CSV export of string channel", + ), ], ) def test_csv_export( diff --git a/test/endpoints/test_get_records.py b/test/endpoints/test_get_records.py index 98fe4fa4..7e2d93bd 100644 --- a/test/endpoints/test_get_records.py +++ b/test/endpoints/test_get_records.py @@ -460,6 +460,28 @@ class TestGetRecords: marks=MARK_GEMINI_TEST, id="Gemini: Query for bit_depth, present", ), + pytest.param( + {"metadata.shotnum": "20230606-115959"}, + 0, + 1, + "metadata.shotnum ASC", + ["channels.ASTRA_CONTROL_MODE_STRING.data"], + False, + None, + [], + [ + { + "_id": "20230606120000456", + "channels": { + "ASTRA_CONTROL_MODE_STRING": { + "data": "2USERS", + }, + }, + }, + ], + marks=MARK_GEMINI_TEST, + id="Gemini: Query using string channel projection", + ), ], ) def test_valid_get_records( diff --git a/test/export/20230605080000_to_20230605080300_ASTRA_CONTROL_MODE_STRING.csv b/test/export/20230605080000_to_20230605080300_ASTRA_CONTROL_MODE_STRING.csv new file mode 100644 index 00000000..33dfa05c --- /dev/null +++ b/test/export/20230605080000_to_20230605080300_ASTRA_CONTROL_MODE_STRING.csv @@ -0,0 +1,3 @@ +shotnum,timestamp,epac_ops_data_version,ASTRA_CONTROL_MODE_STRING +20230605-075959,2023-06-05T08:00:00.123000,1.0,2USERS +20230605-080259,2023-06-05T08:03:00.234000,1.2,2USERS \ No newline at end of file From 931a184f22fba5382bcfe0ac7f410f510f723d67 Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Wed, 3 Jun 2026 16:39:40 +0000 Subject: [PATCH 48/52] Adding tests for string types --- test/endpoints/test_export.py | 2 +- ...80000123_to_20230605080300234_ASTRA_CONTROL_MODE_STRING.csv | 3 +++ ...30605080000_to_20230605080300_ASTRA_CONTROL_MODE_STRING.csv | 3 --- 3 files changed, 4 insertions(+), 4 deletions(-) create mode 100644 test/export/20230605080000123_to_20230605080300234_ASTRA_CONTROL_MODE_STRING.csv delete mode 100644 test/export/20230605080000_to_20230605080300_ASTRA_CONTROL_MODE_STRING.csv diff --git a/test/endpoints/test_export.py b/test/endpoints/test_export.py index 3a27bef5..5a5b6b24 100644 --- a/test/endpoints/test_export.py +++ b/test/endpoints/test_export.py @@ -841,7 +841,7 @@ class TestExport: None, None, [], # functions - f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}_ASTRA_CONTROL_MODE_STRING.csv", + f"{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}.csv", f"export/{RECORD_ID_05_0800}_to_{RECORD_ID_05_0803}_ASTRA_CONTROL_MODE_STRING.csv", None, marks=MARK_GEMINI_TEST, diff --git a/test/export/20230605080000123_to_20230605080300234_ASTRA_CONTROL_MODE_STRING.csv b/test/export/20230605080000123_to_20230605080300234_ASTRA_CONTROL_MODE_STRING.csv new file mode 100644 index 00000000..f3b38830 --- /dev/null +++ b/test/export/20230605080000123_to_20230605080300234_ASTRA_CONTROL_MODE_STRING.csv @@ -0,0 +1,3 @@ +"shotnum","timestamp","epac_ops_data_version","ASTRA_CONTROL_MODE_STRING", +"20230605-075959",2023-06-05 08:00:00.123000,"1.0","2USERS", +"20230605-080259",2023-06-05 08:03:00.234000,"1.2","2USERS", diff --git a/test/export/20230605080000_to_20230605080300_ASTRA_CONTROL_MODE_STRING.csv b/test/export/20230605080000_to_20230605080300_ASTRA_CONTROL_MODE_STRING.csv deleted file mode 100644 index 33dfa05c..00000000 --- a/test/export/20230605080000_to_20230605080300_ASTRA_CONTROL_MODE_STRING.csv +++ /dev/null @@ -1,3 +0,0 @@ -shotnum,timestamp,epac_ops_data_version,ASTRA_CONTROL_MODE_STRING -20230605-075959,2023-06-05T08:00:00.123000,1.0,2USERS -20230605-080259,2023-06-05T08:03:00.234000,1.2,2USERS \ No newline at end of file From 2387832da79b49785fab6d472d1eef1e1ecb6761 Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Wed, 3 Jun 2026 16:44:33 +0000 Subject: [PATCH 49/52] lint --- test/endpoints/test_channel_summary.py | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/test/endpoints/test_channel_summary.py b/test/endpoints/test_channel_summary.py index 4e41f674..69770a3f 100644 --- a/test/endpoints/test_channel_summary.py +++ b/test/endpoints/test_channel_summary.py @@ -71,11 +71,11 @@ def test_valid_scalar_channel_summary( ], ) def test_valid_string_channel_summary( - self, - test_app: TestClient, - login_and_get_token, - channel_name, - expected_summary, + self, + test_app: TestClient, + login_and_get_token, + channel_name, + expected_summary, ): test_response = test_app.get( f"/channels/summary/{channel_name}", From 5ba3548709d4382ff719724acbb8c4a1854c1626 Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Thu, 4 Jun 2026 10:44:28 +0000 Subject: [PATCH 50/52] marking as a gemini test --- test/endpoints/test_channel_summary.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/test/endpoints/test_channel_summary.py b/test/endpoints/test_channel_summary.py index 69770a3f..673388c1 100644 --- a/test/endpoints/test_channel_summary.py +++ b/test/endpoints/test_channel_summary.py @@ -14,7 +14,7 @@ set_preferred_colourmap, set_preferred_float_colourmap, unset_preferred_colourmap, - unset_preferred_float_colourmap, + unset_preferred_float_colourmap, MARK_GEMINI_TEST, ) @@ -66,6 +66,7 @@ def test_valid_scalar_channel_summary( {DATETIME_STR_05_0800: "2USERS"}, ], }, + marks=MARK_GEMINI_TEST, id="String channel summary", ), ], From 693732aef4302a78e5ccccc071f1e748699fedcf Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Thu, 4 Jun 2026 11:47:25 +0000 Subject: [PATCH 51/52] linting --- test/endpoints/test_channel_summary.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/test/endpoints/test_channel_summary.py b/test/endpoints/test_channel_summary.py index 673388c1..8019f66a 100644 --- a/test/endpoints/test_channel_summary.py +++ b/test/endpoints/test_channel_summary.py @@ -14,7 +14,8 @@ set_preferred_colourmap, set_preferred_float_colourmap, unset_preferred_colourmap, - unset_preferred_float_colourmap, MARK_GEMINI_TEST, + unset_preferred_float_colourmap, + MARK_GEMINI_TEST, ) From cc43254348062e002b79a22527ba9e41ba3910c4 Mon Sep 17 00:00:00 2001 From: kdu14933 Date: Thu, 4 Jun 2026 16:06:24 +0000 Subject: [PATCH 52/52] linting --- test/endpoints/test_channel_summary.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/test/endpoints/test_channel_summary.py b/test/endpoints/test_channel_summary.py index 8019f66a..f382f4a6 100644 --- a/test/endpoints/test_channel_summary.py +++ b/test/endpoints/test_channel_summary.py @@ -11,11 +11,11 @@ DATETIME_STR_05_0803, DATETIME_STR_05_1700, DATETIME_STR_06_1200, + MARK_GEMINI_TEST, set_preferred_colourmap, set_preferred_float_colourmap, unset_preferred_colourmap, unset_preferred_float_colourmap, - MARK_GEMINI_TEST, )