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Add tests for workflow frameworks #371

Add tests for workflow frameworks

Add tests for workflow frameworks #371

Triggered via pull request January 8, 2026 20:25
Status Cancelled
Total duration 3m 26s
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pipeline.yml

on: pull_request
Matrix: unittest_matrix
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11 errors and 16 warnings
unittest_matrix (ubuntu-latest, 3.11)
Process completed with exit code 1.
unittest_matrix (ubuntu-latest, 3.12)
The strategy configuration was canceled because "unittest_matrix.ubuntu-latest_3_11" failed
unittest_matrix (ubuntu-latest, 3.12)
The operation was canceled.
unittest_matrix (macos-latest, 3.12)
The strategy configuration was canceled because "unittest_matrix.ubuntu-latest_3_11" failed
unittest_matrix (macos-latest, 3.12)
The operation was canceled.
coverage
Process completed with exit code 1.
quantumespresso
The run was canceled by @jan-janssen.
quantumespresso
The operation was canceled.
Pipeline
The run was canceled by @jan-janssen.
nfdi4ing
The run was canceled by @jan-janssen.
nfdi4ing
The operation was canceled.
documentation
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
unittest_matrix (ubuntu-latest, 3.11)
warning libmamba [galaxy-util-25.1.dev0-pyhd8ed1ab_0] The following files were already present in the environment: - lib/python3.11/site-packages/galaxy/__init__.py - lib/python3.11/site-packages/galaxy/py.typed
unittest_matrix (ubuntu-latest, 3.11)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
pip_check
warning libmamba [galaxy-util-25.1.dev0-pyhd8ed1ab_0] The following files were already present in the environment: - lib/python3.12/site-packages/galaxy/__init__.py - lib/python3.12/site-packages/galaxy/py.typed
pip_check
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
unittest_matrix (ubuntu-latest, 3.12)
warning libmamba [galaxy-util-25.1.dev0-pyhd8ed1ab_0] The following files were already present in the environment: - lib/python3.12/site-packages/galaxy/__init__.py - lib/python3.12/site-packages/galaxy/py.typed
unittest_matrix (ubuntu-latest, 3.12)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
unittest_matrix (macos-latest, 3.12)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
coverage
warning libmamba [galaxy-util-25.1.dev0-pyhd8ed1ab_0] The following files were already present in the environment: - lib/python3.12/site-packages/galaxy/__init__.py - lib/python3.12/site-packages/galaxy/py.typed
coverage
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
arithmetic
warning libmamba [galaxy-util-25.1.dev0-pyhd8ed1ab_0] The following files were already present in the environment: - lib/python3.12/site-packages/galaxy/__init__.py - lib/python3.12/site-packages/galaxy/py.typed
arithmetic
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
quantumespresso
warning libmamba [galaxy-util-25.1.dev0-pyhd8ed1ab_0] The following files were already present in the environment: - lib/python3.12/site-packages/galaxy/__init__.py - lib/python3.12/site-packages/galaxy/py.typed
quantumespresso
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
nfdi4ing
warning libmamba [galaxy-util-25.1.dev0-pyhd8ed1ab_0] The following files were already present in the environment: - lib/python3.12/site-packages/galaxy/__init__.py - lib/python3.12/site-packages/galaxy/py.typed
nfdi4ing
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.