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add DeepVariant intervals for fiberseq kinetics/m6A-tags dataset - #2303

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chaochaowong merged 4 commits into
nf-core:pacvarfrom
chaochaowong:pacvar
Oct 7, 2026
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chaochaowong merged 4 commits into
nf-core:pacvarfrom
chaochaowong:pacvar

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@chaochaowong

@chaochaowong chaochaowong commented Oct 7, 2026 •

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Add compact BED files covering the high-confidence alignments in the
Revio kinetics and m6A-tags test BAM. These intervals reduce DeepVariant runtime in
the PacVar Fiber-seq kinetics test profile.

@erikrikarddaniel erikrikarddaniel left a comment

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No README update? We're supposed to describe what the test data is, how it was created etc. in a README.md in the root directory of the repo. Approving anyway.

@chaochaowong

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No README update? We're supposed to describe what the test data is, how it was created etc. in a README.md in the root directory of the repo. Approving anyway.

Thanks. I edited the README.md file.

@chaochaowong
chaochaowong merged commit d767427 into nf-core:pacvar Oct 7, 2026
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2 participants