This repository hosts a collection of tools to interact with metadata contained in the several NEUROPOLY databases.
Main Goal Provide an exploration tool into every database, agnostic to the data structure (standard) and management software (e.g. DataLad, Git, etc.) used to store the data.
This step needs to be done in order to list all available datasets at NeuroPoly. If new datasets come in, this step needs to be done again. Currently, the node needs to be installed locally. Eventually, users won't need to do that as the node will be installed on a server at NeuroPoly.
This step installs the tool that is used to package and download datasets. You only need to do this step once.
This step explains how to download data that are selected on the neurobagel web interface.
Components of the project :
- [Database exploration] : Complete and structured deployment of a local NeuroBagel node, extended with NeuroPoly-specific imaging modality vocabulary.
- [Database ingestion]: A set of command line tools (under
npdb) to ingest data into a local NeuroBagel node (currently supportsNeurogiteaindexed databases only). - [Metadata standardization]: A set of command line tools (under
npdb standardize) to manipulate common standards (e.g. BIDS, Bagel).