Good afternoon,
I have used older versions of modkit to extract read information to tables from modbams generated with remora with no issues. However, I have been trying to do the same with v0.6.3 and keep getting errors.
I tried running the following:
modkit extract read-stats remora_calls.bam remora_read_stats6.tsv --mod-codes C:m
and have been getting the following error partway into generation of the table:
[ERROR] Error! reader thread paniced, Any { .. }
Running modkit extract calls on the same bam file using version 0.6.0 does not have this problem. Ideally, I'd like to use the newest version of modkit so I can extract read-stats, rather than the calls file, so if you have any advice on how to proceed, I would appreciate it!
Good afternoon,
I have used older versions of modkit to extract read information to tables from modbams generated with remora with no issues. However, I have been trying to do the same with v0.6.3 and keep getting errors.
I tried running the following:
modkit extract read-stats remora_calls.bam remora_read_stats6.tsv --mod-codes C:m
and have been getting the following error partway into generation of the table:
[ERROR] Error! reader thread paniced, Any { .. }
Running modkit extract calls on the same bam file using version 0.6.0 does not have this problem. Ideally, I'd like to use the newest version of modkit so I can extract read-stats, rather than the calls file, so if you have any advice on how to proceed, I would appreciate it!