Hi,
I am running v0.4.3 as a Singularity container. secphase_index can process the BAM file (1 cell of hifi reads), but when I start secphase like this:
./secphase_v0.4.3.sif secphase -i sample.nsort.bam -f sample.fasta --hifi
it immediately segfaults (the index is present in the same folder named like sample.bam.secphase.index). In principle, I could share the BAM file for debugging if required, but only via Globus.
Best,
Peter
Hi,
I am running v0.4.3 as a Singularity container.
secphase_indexcan process the BAM file (1 cell of hifi reads), but when I startsecphaselike this:it immediately segfaults (the index is present in the same folder named like
sample.bam.secphase.index). In principle, I could share the BAM file for debugging if required, but only via Globus.Best,
Peter