I modified gffread to address an issue it had when processing very large genomes, especially when a single chromosome exceeds 2GB in length. This issue caused gffread to fail in correctly extracting transcript sequences. I optimized the code to better handle large file reads.
./gffread-master/gffread ref.gtf -g ref.fa -w transcript.fa
gffread-master.64.tar.gz
I modified gffread to address an issue it had when processing very large genomes, especially when a single chromosome exceeds 2GB in length. This issue caused gffread to fail in correctly extracting transcript sequences. I optimized the code to better handle large file reads.
./gffread-master/gffread ref.gtf -g ref.fa -w transcript.fa
gffread-master.64.tar.gz