Update HiPhivePriorityResult to handle G2P and MONDO links

Author: julesjacobsen

exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/HiPhivePriorityResult.java

@@ -458,12 +458,17 @@ private void makePicoBestPhenotypeMatchHtml(StringBuilder stringBuilder, Map<Phe
     }
 
     private String makePicoDiseaseLink(String diseaseId, String diseaseTerm) {
+        if (diseaseId.startsWith("G2P")) {
+            // e.g. G2P01586 https://www.ebi.ac.uk/gene2phenotype/lgd/G2P01586
+            return "<a href=\"https://www.ebi.ac.uk/gene2phenotype/lgd/" + diseaseId + "\">" + diseaseTerm + "</a>";
+        }
         String[] databaseNameAndIdentifier = diseaseId.split(":");
         String databaseName = databaseNameAndIdentifier[0];
         String id = databaseNameAndIdentifier[1];
         String target = switch (databaseName) {
             case "OMIM" -> "https://www.omim.org/entry/" + id;
             case "ORPHA" -> "https://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=en&Expert=" + id;
+            case "MONDO" -> "https://monarchinitiative.org/MONDO:" + id;
             default -> id;
         };
         return "<a href=\""+ target + "\">" + diseaseTerm + "</a>";