diff --git a/.github/workflows/python-package-conda.yml b/.github/workflows/python-package-conda.yml index d2dc57b8..0010b2b3 100644 --- a/.github/workflows/python-package-conda.yml +++ b/.github/workflows/python-package-conda.yml @@ -30,7 +30,7 @@ jobs: conda config --add channels bioconda conda config --add channels conda-forge conda install --yes --file ci/conda_requirements.txt - pip install -e . --no-deps + python -m pip install -e . --no-deps - name: Test shell: bash -l {0} diff --git a/ci/conda_requirements.txt b/ci/conda_requirements.txt index 3dcf5475..ffd9a7fd 100644 --- a/ci/conda_requirements.txt +++ b/ci/conda_requirements.txt @@ -20,4 +20,5 @@ pysam biopython seaborn pyarrow -covar \ No newline at end of file +covar +pip \ No newline at end of file diff --git a/setup.py b/setup.py index ab7dc6a1..0eaf65dc 100644 --- a/setup.py +++ b/setup.py @@ -35,7 +35,8 @@ }, install_requires=[ "click", "numpy", "pandas", "cvxpy", "seaborn", "pysam", - "biopython", "sphinx", "sphinx_rtd_theme", + "biopython", "sphinx", "sphinx_rtd_theme","pyarrow", "tqdm", + "plotly", "sphinx-click @ git+https://github.com/dylanpilz/sphinx-click.git" ] )