Juicer SLURM Submission Error: Invalid Time Limit / Dependency Problem

[IrinaVKuznetsova]

Hi

I’m getting this error when running Juicer on the HPC:

error : "sbatch: error: Batch job submission failed: Job dependency problem
sbatch: error: Batch job submission failed: Requested time limit is invalid (missing or exceeds some limit)"

I’ve already tried debugging by changing the time format, increasing and decreasing the time and CPU values, and testing both Juicer v1.6 and Juicer 2.0.
Any advice on what could be wrong?

#SBATCH --job-name=02b_juicer
#SBATCH --cpus-per-task=128
#SBATCH --mem=900G
#SBATCH --time=96:00:00

"${JUICER}/SLURM/scripts/juicer.sh" \
  -D "${JUICER}" \
  -d "${OUT}" \
  -g barley_compass \
  -z "${OUT}/references/$(basename "${GENOME}")" \
  -p "${DATA}/compass.chrom.sizes" \
  -s none \
  -Q 96:00:00 \
  -L 02:00:00 \
  -q highmem \
  -l highmem \
  -t 128 

thank you

[IrinaVKuznetsova]

If anyone has a similar error message, here is the solution:
you need to align the queue_time, long_queue_time, and SBATCH -t values in juicer.sh and mega.sh with your partition’s maximum wall time.

Hi

I’m getting this error when running Juicer on the HPC:

error : "sbatch: error: Batch job submission failed: Job dependency problem
sbatch: error: Batch job submission failed: Requested time limit is invalid (missing or exceeds some limit)"

I’ve already tried debugging by changing the time format, increasing and decreasing the time and CPU values, and testing both Juicer v1.6 and Juicer 2.0. Any advice on what could be wrong?

#SBATCH --job-name=02b_juicer
#SBATCH --cpus-per-task=128
#SBATCH --mem=900G
#SBATCH --time=96:00:00

"${JUICER}/SLURM/scripts/juicer.sh" \
  -D "${JUICER}" \
  -d "${OUT}" \
  -g barley_compass \
  -z "${OUT}/references/$(basename "${GENOME}")" \
  -p "${DATA}/compass.chrom.sizes" \
  -s none \
  -Q 96:00:00 \
  -L 02:00:00 \
  -q highmem \
  -l highmem \
  -t 128 

thank you